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[180568_at]

Description B0294.2 /REP_DB=WormBase Gene ID /WP=CE19657 /TR=Q9TXP9 /GB=AAC64977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 80.2
(-3)
A 		173
(3)
A 		166.7
(2.6)
A 		167.2
(2.6)
A 		93
B 107.6
(-3)
A 		162.7
(3)
A 		159.8
(2.7)
A 		135.8
(0.1)
A 		55
C 100.9
(-2.3)
A 		135.8
(3)
A 		96
(-3)
A 		127.1
(1.7)
A 		40
avr 96.2
(-3) 		157.2
(3) 		140.8
(1.4) 		143.4
(1.6) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 160.9
(0.7)
A 		113.6
(-3)
A 		113.4
(-3)
A 		145.1
(-0.5)
M 		189.5
(3)
A 		115.9
(-2.8)
A 		76
B 78.8
(-3)
A 		91.1
(-2.1)
A 		125.7
(0.3)
A 		164.1
(3)
P 		157
(2.5)
P 		99.2
(-1.6)
A 		85
C 126.5
(-2.1)
A 		109.6
(-3)
A 		227.1
(3)
P 		118.1
(-2.6)
P 		175.2
(0.3)
P 		114.4
(-2.8)
A 		118
avr 122.1
(-1.5) 		104.8
(-3) 		155.4
(1.4) 		142.4
(0.3) 		173.9
(3) 		109.8
(-2.6) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 29.2
(-1.5)
A 		37.6
(1.1)
A 		43.6
(3)
A 		24.5
(-3)
A 		19
B 34.3
(-0.1)
A 		40.2
(3)
A 		37
(1.3)
A 		28.9
(-3)
A 		11
C 33.4
(1.1)
A 		39
(3)
A 		33.5
(1.1)
A 		21.4
(-3)
A 		18
avr 32.3
(0.2) 		38.9
(3) 		38
(2.6) 		24.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 29.7
(-2.1)
A 		40.4
(-0.1)
A 		24.7
(-3)
A 		36.8
(-0.8)
M 		57.2
(3)
A 		28.2
(-2.4)
A 		33
B 27.4
(-3)
A 		30.3
(-2.5)
A 		30.5
(-2.5)
A 		43.5
(-0.3)
P 		63.8
(3)
P 		37
(-1.4)
A 		36
C 46.9
(1.1)
A 		33.4
(-1.3)
A 		57.8
(3)
P 		23.8
(-3)
P 		56.7
(2.8)
P 		38.3
(-0.4)
A 		34
avr 34.7
(-3) 		34.7
(-3) 		37.7
(-2.2) 		34.7
(-3) 		59.2
(3) 		34.5
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18591
Sequence Type Exemplar sequence
Representative Public ID B0294.2 NCBI
Target Description B0294.2 /REP_DB=WormBase Gene ID /WP=CE19657 /TR=Q9TXP9 /GB=AAC64977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) B0294.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0294.2 B0294.2 /REP_DB=WormBase Gene ID /WP=CE19657 /TR=Q9TXP9 /GB=AAC64977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1893213-1893514(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:180568_AT
cagcgatcgaattgccacgtttggtggaatcgcgaacgtcgccttcaatgcaaagagaag
acaagagctcgtcctcgccgacggaacatgccagagaaatgagcgcaccatgttggacgc
tacccgctcagtccactttgcggacacctacatctgctattgttcacagccgctttgcaa
ctccccaatcaccatcgaggacttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCGATCGAATTGCCACGTTTGGT 626 203 24 Antisense
GCCACGTTTGGTGGAATCGCGAACG 627 279 37 Antisense
AATCGCGAACGTCGCCTTCAATGCA 440 167 51 Antisense
GAACGTCGCCTTCAATGCAAAGAGA 323 341 57 Antisense
AGAGAAGACAAGAGCTCGTCCTCGC 599 69 77 Antisense
CTCGCCGACGGAACATGCCAGAGAA 433 233 97 Antisense
GCCAGAGAAATGAGCGCACCATGTT 246 281 113 Antisense
TGAGCGCACCATGTTGGACGCTACC 669 569 123 Antisense
GACACCTACATCTGCTATTGTTCAC 10 369 166 Antisense
TATTGTTCACAGCCGCTTTGCAACT 30 665 181 Antisense
CCCCAATCACCATCGAGGACTTCGA 629 261 206 Antisense
Sequence Source Affymetrix Proprietary Database