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[180567_at] 7TM chemoreceptor, srg family

Description ZC317.5 /REP_DB=WormBase Gene ID /WP=CE15175 /TR=Q23077 /GB=AAB04962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 17      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 43.3
(-3)
A 		43.7
(-2.9)
A 		50.3
(-2.1)
A 		90.6
(3)
A 		47
B 38
(-3)
P 		81.4
(2.8)
A 		45.7
(-2)
P 		82.6
(3)
A 		45
C 39.3
(-2.7)
A 		36.7
(-3)
A 		53.7
(-1)
A 		87.2
(3)
A 		51
avr 40.2
(-3) 		53.9
(-1.2) 		49.9
(-1.8) 		86.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 16.1
(-2)
A 		8.4
(-3)
A 		40.8
(1.2)
A 		32
(0.1)
A 		54.3
(3)
P 		8.4
(-3)
A 		46
B 42.4
(0.9)
P 		32.4
(-1.4)
A 		25.4
(-3)
A 		43.6
(1.2)
A 		51.7
(3)
P 		34.9
(-0.8)
A 		26
C 25.7
(-0.6)
A 		58.2
(3)
A 		4
(-3)
A 		27.9
(-0.4)
A 		8.1
(-2.5)
A 		9.2
(-2.4)
A 		54
avr 28.1
(0.1) 		33
(1.5) 		23.4
(-1.3) 		34.5
(2) 		38
(3) 		17.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 15.8
(3)
A 		9.5
(-3)
A 		13.1
(0.4)
A 		13.3
(0.6)
A 		6
B 12.1
(-2.1)
P 		20.1
(3)
A 		10.6
(-3)
P 		17.6
(1.4)
A 		10
C 13
(-1.2)
A 		10.6
(-3)
A 		18.7
(3)
A 		14.7
(0)
A 		8
avr 13.6
(-2.3) 		13.4
(-3) 		14.1
(-0.7) 		15.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3
(-2.6)
A 		3
(-2.6)
A 		8.9
(-0.1)
A 		8.1
(-0.5)
A 		16.4
(3)
P 		2.1
(-3)
A 		14
B 14.7
(0.4)
P 		10.8
(-1.1)
A 		6.2
(-3)
A 		11.5
(-0.9)
A 		21
(3)
P 		13
(-0.2)
A 		15
C 9.5
(0.1)
A 		17.7
(3)
A 		1
(-3)
A 		5.6
(-1.3)
A 		2.6
(-2.4)
A 		3.1
(-2.2)
A 		17
avr 9.1
(-0.2) 		10.5
(0.9) 		5.4
(-3) 		8.4
(-0.7) 		13.3
(3) 		6.1
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11890
Sequence Type Exemplar sequence
Representative Public ID ZC317.5 NCBI
Target Description ZC317.5 /REP_DB=WormBase Gene ID /WP=CE15175 /TR=Q23077 /GB=AAB04962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072043 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-68) (srg-68) mRNA, complete cds. 11/11 None
GENEFINDER00000026648 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5461340:5465247:-1 11/11 None
ZC317.5 ENSEMBL cdna:known chromosome:CEL140:V:5463603:5465247:-1 gene:ZC317.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5463602-5465247(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-68
Ensembl ZC317.5
Entrez Gene 191141 Entrez gene
SwissProt Q23077 EMBL-EBI
WormBase CE15175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04962 Serpentine receptor, class g (gamma) protein 68 [Caenorhabditis elegans] ref|NP_504444.1| Serpentine Receptor, class G (gamma) family member (srg-68) [Caenorhabditis elegans] 1.0E-180
blast AAB04961 Serpentine receptor, class g (gamma) protein 67 [Caenorhabditis elegans] ref|NP_504443.2| Serpentine Receptor, class G (gamma) family member (srg-67) [Caenorhabditis elegans] 1.0E-171
blast AAB04962 Serpentine receptor, class g (gamma) protein 68 [Caenorhabditis elegans] ref|NP_504444.1| Serpentine Receptor, class G (gamma) family member (srg-68) [Caenorhabditis elegans] 1.0E-167
blast NP_504449 Serpentine Receptor, class G (gamma) family member (srg-66) [Caenorhabditis elegans] gb|AAO26001.1| Serpentine receptor, class g (gamma) protein 66 [Caenorhabditis elegans] 1.0E-144
blast NP_504449 Serpentine Receptor, class G (gamma) family member (srg-66) [Caenorhabditis elegans] gb|AAO26001.1| Serpentine receptor, class g (gamma) protein 66 [Caenorhabditis elegans] 1.0E-136
blast AAB04961 Serpentine receptor, class g (gamma) protein 67 [Caenorhabditis elegans] ref|NP_504443.2| Serpentine Receptor, class G (gamma) family member (srg-67) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504444.1 8 21-43,53-75,82-101,106-128,141-163,190-212,233-255,270-289
ZC317.5 8 21-43,53-75,82-101,106-128,141-163,190-212,233-255,270-289
GENEFINDER00000026648 12 21-43,53-75,157-179,206-228,249-271,286-305,353-375,435-457,469-491,522-544,564-586,601-620
Sequence
Target Sequence 
>C. ELEGANS:180567_AT
tacaatttctatcggcttcttcgctgaccgttcaccgaatttcttcattttggtggcctc
aaacctatgaaaagttctggacaaaatgttatttctatgttggtgcagcattcatattct
acagttttctgccaactttgacttggtttgattttgcaaatgaaatccttatcgtggacg
ataaactgatgagatccagaaatccggaaataattattaaagctacaaatgtgacggctg
tatttactgttgtttattttataattctttgtgtgctgggaattataacatccgtaatga
ttggtaaaaataagcaagctctctccgccgtatacgaaaaaattgccaagaaactcactc
atatcgcaattgtccactgcgtcgtgtttgctggaattttattatggagtgttctcactt
cattgaactcatattggaactttatcccaagtgttattattgcaattaatcaaaccctaa
tggtgttttcttcggatttgatgacattatcactaccatatattctcttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAATTTCTATCGGCTTCTTCGCT 707 641 344 Antisense
TGACCGTTCACCGAATTTCTTCATT 318 569 368 Antisense
TCTTCATTTTGGTGGCCTCAAACCT 417 303 385 Antisense
GCAGCATTCATATTCTACAGTTTTC 11 313 448 Antisense
ACAGTTTTCTGCCAACTTTGACTTG 336 107 464 Antisense
GTGACGGCTGTATTTACTGTTGTTT 364 483 574 Antisense
TAAAAATAAGCAAGCTCTCTCCGCC 195 641 648 Antisense
GCTCTCTCCGCCGTATACGAAAAAA 548 299 661 Antisense
GCCAAGAAACTCACTCATATCGCAA 412 277 688 Antisense
CCTAATGGTGTTTTCTTCGGATTTG 600 193 819 Antisense
ATCACTACCATATATTCTCTTATTT 167 29 852 Antisense
Sequence Source Affymetrix Proprietary Database