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[180565_at]

Description T24H10.5 /REP_DB=WormBase Gene ID /WP=CE03730 /TR=Q22755 /GB=CAA90947.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 3.9
(-3)
A 		10.5
(-2)
A 		5.5
(-2.8)
A 		45.1
(3)
A 		41
B 21.9
(2.6)
A 		8.1
(-2.4)
A 		6.4
(-3)
A 		23.1
(3)
A 		17
C 10.3
(-0.8)
A 		3.1
(-2.6)
A 		1.6
(-3)
A 		25.1
(3)
A 		24
avr 12
(-1.3) 		7.2
(-2.4) 		4.5
(-3) 		31.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.5
(-1.4)
A 		4.2
(-2.7)
A 		10.3
(-1.9)
A 		4.2
(-2.7)
A 		45.5
(3)
A 		2.1
(-3)
A 		43
B 1.6
(-3)
A 		3.7
(-2.6)
A 		3.3
(-2.7)
A 		2.2
(-2.9)
A 		33.5
(3)
A 		9.5
(-1.5)
A 		32
C 11.1
(1.7)
A 		13.5
(3)
A 		2.8
(-3)
A 		4.1
(-2.3)
A 		4.3
(-2.2)
A 		6.3
(-1)
A 		11
avr 8.7
(-1.7) 		7.1
(-2.1) 		5.5
(-2.5) 		3.5
(-3) 		27.8
(3) 		6
(-2.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.4
(-3)
A 		2.3
(-2)
A 		1.4
(-3)
A 		6.6
(3)
A 		5
B 7
(3)
A 		2
(-2.5)
A 		1.5
(-3)
A 		4.9
(0.7)
A 		6
C 3.4
(1.7)
A 		0.9
(-2.5)
A 		0.6
(-3)
A 		4.2
(3)
A 		4
avr 3.9
(1.1) 		1.7
(-2.3) 		1.2
(-3) 		5.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.5
(-2.1)
A 		1.5
(-2.5)
A 		2.2
(-2.2)
A 		1.1
(-2.7)
A 		13.7
(3)
A 		0.5
(-3)
A 		13
B 0.6
(-3)
A 		1.2
(-2.7)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		13.6
(3)
A 		3.5
(-1.7)
A 		13
C 4.1
(3)
A 		4.1
(3)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		1.4
(-1.8)
A 		2.1
(-0.5)
A 		3
avr 2.4
(-1.9) 		2.3
(-2) 		1.2
(-2.7) 		0.8
(-3) 		9.6
(3) 		2
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3237
Sequence Type Exemplar sequence
Representative Public ID T24H10.5 NCBI
Target Description T24H10.5 /REP_DB=WormBase Gene ID /WP=CE03730 /TR=Q22755 /GB=CAA90947.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063541 NCBI Caenorhabditis elegans T24H10.5 (T24H10.5) mRNA, complete cds. 11/11 None
SNAP00000021889 ENSEMBL cdna:SNAP chromosome:CEL140:II:9102619:9105360:1 11/11 None
GENEFINDER00000021898 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9101007:9105491:1 11/11 None
T24H10.5 ENSEMBL cdna:known chromosome:CEL140:II:9102619:9105360:1 gene:T24H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9102615-9105357(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24H10.5
Entrez Gene 188871 Entrez gene
SwissProt Q22755 EMBL-EBI
WormBase CE03730 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90947 Hypothetical protein T24H10.5 [Caenorhabditis elegans] ref|NP_495942.1| T24H10.5 [Caenorhabditis elegans] 0.0
blast CAB01175 Hypothetical protein F38H4.1 [Caenorhabditis elegans] ref|NP_502239.1| F38H4.1 [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180565_AT
tgagacccggattgttggctgcaggattaatgatggaaaatatgactggtagagtaacga
tcatgaaatatatccgtgatctatcgaatgtgagcgatactagaaaatattttggcgatg
caggagcgaagtttccatcagatatgtcaattcttgttcaaaggattctactggaagaga
aggagaaagatactactgcagcaaaacgaatcgtgggacaattcctaacgtcgaatccta
caattcttgaagacaagaaactcgaactattggcgattatggaagaggagggatcagtgt
ctggaccggagcaacttataactgatttgaagacgacgaagccgatggttgagaacaatt
gtaaattctgggctgattgcatcgccaaacttacttctcaaaaagcttatcgaagtgtta
gaactttgagcgcggaactacttccaatgtgccttggaacgcagatttttatagaagtat
ccaaatgctgttctattgctgcaaaagactcgaagactcctaacactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACCCGGATTGTTGGCTGCAGG 587 565 677 Antisense
GGGACAATTCCTAACGTCGAATCCT 250 495 891 Antisense
GAGGAGGGATCAGTGTCTGGACCGG 222 403 961 Antisense
GTCTGGACCGGAGCAACTTATAACT 145 467 975 Antisense
GAAGACGACGAAGCCGATGGTTGAG 423 331 1005 Antisense
GTAAATTCTGGGCTGATTGCATCGC 594 461 1037 Antisense
TGATTGCATCGCCAAACTTACTTCT 90 565 1050 Antisense
GAACTTTGAGCGCGGAACTACTTCC 641 339 1097 Antisense
GCGGAACTACTTCCAATGTGCCTTG 41 295 1108 Antisense
TATCCAAATGCTGTTCTATTGCTGC 116 659 1154 Antisense
AAGACTCGAAGACTCCTAACACTGA 646 153 1181 Antisense
Sequence Source Affymetrix Proprietary Database