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[180564_at]

Description F32D1.4 /REP_DB=WormBase Gene ID /WP=CE09868 /TR=O16295 /GB=AAB65357.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 0      6grp_cgc > 55      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 34.7
(1)
A 		5
(-3)
A 		42.6
(2.1)
A 		49.2
(3)
A 		44
B 12.7
(-2.5)
A 		9.5
(-3)
A 		15.2
(-2.1)
A 		48.3
(3)
A 		39
C 19.8
(-3)
A 		34.2
(-1.4)
A 		51.5
(0.5)
A 		74
(3)
A 		54
avr 22.4
(-2.1) 		16.2
(-3) 		36.4
(-0) 		57.2
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 5.3
(-2.7)
A 		4.7
(-2.8)
A 		48.5
(3)
A 		3
(-3)
A 		3.5
(-2.9)
A 		16.2
(-1.3)
A 		46
B 8.9
(-2.4)
A 		32.6
(1.3)
A 		14
(-1.6)
A 		41.6
(2.7)
A 		5
(-3)
A 		43.4
(3)
A 		38
C 5.9
(-3)
A 		51.7
(3)
A 		8.9
(-2.6)
A 		9.6
(-2.5)
A 		6.6
(-2.9)
A 		18.4
(-1.4)
A 		46
avr 6.7
(-2.6) 		29.7
(3) 		23.8
(1.6) 		18.1
(0.2) 		5
(-3) 		26
(2.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.6
(3)
A 		1.1
(-3)
A 		11.1
(2.2)
A 		7.2
(0.2)
A 		12
B 4.1
(-1.7)
A 		2.3
(-3)
A 		3.5
(-2.1)
A 		10.3
(3)
A 		8
C 6.5
(-3)
A 		9.8
(-1.3)
A 		18
(3)
A 		12.5
(0.1)
A 		12
avr 7.7
(0) 		4.4
(-3) 		10.9
(3) 		10
(2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-2.9)
A 		1.7
(-2.4)
A 		10.6
(3)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		3.9
(-1.1)
A 		10
B 3.1
(-2.5)
A 		10.9
(0.8)
A 		3.4
(-2.4)
A 		11
(0.8)
A 		2
(-3)
A 		16.2
(3)
A 		14
C 2.2
(-2.9)
A 		15.8
(3)
A 		2.3
(-2.8)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		6.2
(-1.1)
A 		14
avr 2.1
(-2.7) 		9.5
(3) 		5.4
(-0.2) 		4.6
(-0.8) 		1.7
(-3) 		8.8
(2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15818
Sequence Type Exemplar sequence
Representative Public ID F32D1.4 NCBI
Target Description F32D1.4 /REP_DB=WormBase Gene ID /WP=CE09868 /TR=O16295 /GB=AAB65357.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071800(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071800 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-13) (grl-13) mRNA, complete cds. 10/11 None
GENEFINDER00000007332 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4362536:4364363:-1 11/11 None
F32D1.4 ENSEMBL cdna:known chromosome:CEL140:V:4362536:4364424:-1 gene:F32D1.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007315 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4362535-4363883(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-13
Ensembl F32D1.4
Entrez Gene 185200 Entrez gene
SwissProt O16295 EMBL-EBI
WormBase CE34839 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65357 Ground-like (grd related) protein 13 [Caenorhabditis elegans] ref|NP_504201.2| GRound-Like (grd related) family member (grl-13) [Caenorhabditis elegans] 1.0E-115
blast AAB65357 Ground-like (grd related) protein 13 [Caenorhabditis elegans] ref|NP_504201.2| GRound-Like (grd related) family member (grl-13) [Caenorhabditis elegans] 3.0E-97
blast CAE56051 Hypothetical protein CBG23622 [Caenorhabditis briggsae] 3.0E-74
blast CAE56051 Hypothetical protein CBG23622 [Caenorhabditis briggsae] 1.0E-67
blast CAE71942 Hypothetical protein CBG19006 [Caenorhabditis briggsae] 1.0E-12
blast CAE71942 Hypothetical protein CBG19006 [Caenorhabditis briggsae] 5.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.5E-30
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.7E-29
Sequence
Target Sequence 
>C. ELEGANS:180564_AT
agcagcagccctattattcagtacctcatccgattcctattcaaacacaacaatttcata
attcctatcagcagactccggtttttacaagcagctacaatgctcctccatttgcttctt
cgtcttcctattcgaatgctccaaattccttccagaatgcaccgattcaagtggcttctg
caaaagaaacttctgctgacacctttgacacgttaatccaaaaaagcaagccagaaacaa
cggatatgaagaatgatctcgatgtggatgtaaacgctctatcaaactttgaaacttcat
tgcaagcctataaatcgatgaatcgaaatggtatacgaagggctcaggcagcgaaaactg
agaaggcagggaaatgctctagtgaaaggcttcaacaaattatggaagaggtcagcaggc
acgcaatgtcgtccaacgtgtcagtctcaaagctgaaaatttcgagaggagccaaaaaag
agtttggctacaatttcgatgtgatctgcagccaattcgatttttcctatctcatttctt
ccaatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGCAGCCCTATTATTCAGTACC 497 77 146 Antisense
TCATCCGATTCCTATTCAAACACAA 667 619 171 Antisense
TCATAATTCCTATCAGCAGACTCCG 644 619 201 Antisense
GCAGACTCCGGTTTTTACAAGCAGC 642 311 216 Antisense
TACAAGCAGCTACAATGCTCCTCCA 447 641 231 Antisense
TCGAATGCTCCAAATTCCTTCCAGA 438 601 277 Antisense
GCACCGATTCAAGTGGCTTCTGCAA 309 315 304 Antisense
AAGAGGTCAGCAGGCACGCAATGTC 514 153 551 Antisense
CAATGTCGTCCAACGTGTCAGTCTC 541 181 569 Antisense
TCTGCAGCCAATTCGATTTTTCCTA 576 609 650 Antisense
TTCCTATCTCATTTCTTCCAATATT 202 701 669 Antisense
Sequence Source Affymetrix Proprietary Database