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[180563_at]

Description F47G3.3 /REP_DB=WormBase Gene ID /WP=CE04608 /TR=Q9GYN8 /GB=AAF99951.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 20      4grp_total > 54      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 103.4
(3)
P 		55.7
(-3)
P 		57.1
(-2.8)
P 		68.9
(-1.3)
P 		48
B 95.4
(3)
P 		44.4
(-1.6)
A 		92.1
(2.7)
P 		28.3
(-3)
A 		67
C 92.1
(3)
P 		73
(1.1)
P 		54.7
(-0.8)
P 		32.4
(-3)
A 		60
avr 97
(3) 		57.7
(-1.4) 		68
(-0.2) 		43.2
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 59.5
(-3)
P 		118.9
(3)
P 		77.9
(-1.1)
P 		108.6
(2)
P 		88.5
(-0.1)
P 		59.1
(-3)
P 		60
B 83.7
(-1.6)
P 		106.4
(1.6)
P 		116.7
(3)
P 		73.6
(-3)
P 		91.8
(-0.5)
P 		103.8
(1.2)
P 		43
C 105.2
(1.7)
P 		114.9
(3)
P 		105.6
(1.8)
P 		95
(0.4)
P 		68.5
(-3)
P 		89.2
(-0.3)
P 		46
avr 82.8
(-3) 		113.4
(3) 		100.1
(0.4) 		92.4
(-1.1) 		82.9
(-3) 		84
(-2.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 37.7
(3)
P 		12.1
(-2.6)
P 		14.9
(-2)
P 		10.1
(-3)
P 		28
B 30.4
(3)
P 		11
(-1.8)
A 		21.4
(0.8)
P 		6
(-3)
A 		24
C 30.5
(3)
P 		21
(0.7)
P 		19.1
(0.3)
P 		5.5
(-3)
A 		25
avr 32.9
(3) 		14.7
(-1.2) 		18.5
(-0.4) 		7.2
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11
(-3)
P 		42.3
(3)
P 		17
(-1.8)
P 		27.5
(0.2)
P 		26.7
(0)
P 		14.4
(-2.3)
P 		31
B 29.1
(0)
P 		35.4
(2)
P 		28.3
(-0.3)
P 		19.5
(-3)
P 		37.3
(2.6)
P 		38.7
(3)
P 		19
C 39
(3)
P 		35.1
(1.8)
P 		26.9
(-0.6)
P 		19.1
(-3)
P 		22.2
(-2.1)
P 		29.8
(0.2)
P 		20
avr 26.4
(-1.3) 		37.6
(3) 		24.1
(-2.2) 		22
(-3) 		28.7
(-0.4) 		27.6
(-0.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18427
Sequence Type Exemplar sequence
Representative Public ID F47G3.3 NCBI
Target Description F47G3.3 /REP_DB=WormBase Gene ID /WP=CE04608 /TR=Q9GYN8 /GB=AAF99951.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076029 NCBI Caenorhabditis elegans F47G3.3 (F47G3.3) mRNA, complete cds. 11/11 None
SNAP00000042196 ENSEMBL cdna:SNAP chromosome:CEL140:X:2375991:2378646:1 11/11 None
GENEFINDER00000042202 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2375991:2378646:1 11/11 None
F47G3.3 ENSEMBL cdna:known chromosome:CEL140:X:2375991:2378646:1 gene:F47G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2375990-2378646(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G3.3
Entrez Gene 185944 Entrez gene
SwissProt Q9GYN8 EMBL-EBI
WormBase CE04608 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99951 Hypothetical protein F47G3.3 [Caenorhabditis elegans] ref|NP_508430.1| F47G3.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180563_AT
gactctgcatttttcattgattatggatattattatgtgatgagagcctccattttccag
agcgctaaattcattgttggtgagcaagaagccaaagagcaaacagcgttggacatcaag
caggcgtcggactattcttatcactatacaaatgttcaaatcgctatcaatgacgttctt
gaattgattacttcaaattttgaaaatttgagtgaaacaagcttggttgaaatgggaatc
tatcagtatctggagtcgattattgacgcatgctttgacaatagaagaacaaaggaccag
caaactattttcgacaaggctaaccagcttctgagcaaaactagtgagatgttgggaaag
cacagtaactcatccgagcctgtaacaagtgcaatggacgcttcaggaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCTGCATTTTTCATTGATTATG 207 375 1000 Antisense
GTGATGAGAGCCTCCATTTTCCAGA 510 483 1036 Antisense
ACAGCGTTGGACATCAAGCAGGCGT 553 109 1102 Antisense
GCAGGCGTCGGACTATTCTTATCAC 383 311 1119 Antisense
CAAATCGCTATCAATGACGTTCTTG 510 193 1156 Antisense
GGAGTCGATTATTGACGCATGCTTT 227 517 1251 Antisense
GGACCAGCAAACTATTTTCGACAAG 295 523 1293 Antisense
GACAAGGCTAACCAGCTTCTGAGCA 184 365 1312 Antisense
GAAAGCACAGTAACTCATCCGAGCC 47 361 1355 Antisense
CATCCGAGCCTGTAACAAGTGCAAT 636 211 1370 Antisense
AAGTGCAATGGACGCTTCAGGACCC 109 159 1386 Antisense
Sequence Source Affymetrix Proprietary Database