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[180562_at]

Description B0218.8 /REP_DB=WormBase Gene ID /WP=CE06691 /TR=Q17452 /GB=AAB00670.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 22      6grp_total > 13      4grp_total > 53      6grp_cgc > 50      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4843
1 2 3 4 range
A 5039.7
(3)
P 		2471.7
(-0.2)
P 		2849.4
(0.2)
P 		281.8
(-3)
P 		4758
B 4444
(3)
P 		3110.4
(1.1)
P 		2762.9
(0.6)
P 		197
(-3)
P 		4247
C 4496.4
(3)
P 		2728.5
(0.5)
P 		1867
(-0.7)
P 		222.4
(-3)
P 		4274
avr 4660
(3) 		2770.2
(0.4) 		2493.1
(0.1) 		233.7
(-3) 		4426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2101
1 2 3 4 5 6 range
A 2645.3
(3)
P 		1756.7
(0.5)
P 		2214
(1.8)
P 		2279.1
(2)
P 		1126.1
(-1.3)
P 		543.9
(-3)
P 		2101
B 2466.3
(3)
P 		1848.1
(1)
P 		1500.5
(-0.1)
P 		1666.5
(0.4)
P 		1443.5
(-0.3)
P 		589.5
(-3)
P 		1877
C 2247.1
(3)
P 		1605.8
(0.7)
P 		1608.5
(0.7)
P 		2015.5
(2.2)
P 		1263.2
(-0.6)
P 		592.9
(-3)
P 		1654
avr 2452.9
(3) 		1736.9
(0.7) 		1774.3
(0.8) 		1987
(1.5) 		1277.6
(-0.8) 		575.4
(-3) 		1878
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1797
1 2 3 4 range
A 1834.9
(3)
P 		536.5
(-1.3)
P 		744.9
(-0.6)
P 		41.3
(-3)
P 		1794
B 1417.2
(3)
P 		768.2
(0.2)
P 		640.2
(-0.4)
P 		42
(-3)
P 		1375
C 1488.4
(3)
P 		784.5
(0.1)
P 		650.7
(-0.5)
P 		37.5
(-3)
P 		1451
avr 1580.2
(3) 		696.4
(-0.4) 		678.6
(-0.5) 		40.3
(-3) 		1540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 487.6
(1.3)
P 		624.8
(3)
P 		482.2
(1.3)
P 		578
(2.4)
P 		339.8
(-0.5)
P 		132.4
(-3)
P 		492
B 858.2
(3)
P 		615.2
(0.7)
P 		364.4
(-1.6)
P 		441.4
(-0.9)
P 		586.5
(0.4)
P 		219.8
(-3)
P 		638
C 832.9
(3)
P 		490
(-0.2)
P 		409.4
(-1)
P 		405.3
(-1)
P 		408.8
(-1)
P 		198.5
(-3)
P 		634
avr 726.2
(3) 		576.7
(1.3) 		418.7
(-0.4) 		474.9
(0.2) 		445
(-0.1) 		183.6
(-3) 		543
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10166
Sequence Type Exemplar sequence
Representative Public ID B0218.8 NCBI
Target Description B0218.8 /REP_DB=WormBase Gene ID /WP=CE06691 /TR=Q17452 /GB=AAB00670.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068970 NCBI Caenorhabditis elegans C-type LECtin family member (clec-52) (clec-52) mRNA, complete cds. 11/11 None
SNAP00000005558 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8167185:8168734:-1 9/11 None
GENEFINDER00000005561 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8167185:8168734:-1 11/11 None
B0218.8 ENSEMBL cdna:known chromosome:CEL140:IV:8167164:8168755:-1 gene:B0218.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8167190-8168740(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-52
Ensembl B0218.8
Entrez Gene 181855 Entrez gene
SwissProt Q17452 EMBL-EBI
WormBase CE06691 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604649_AT similar to mannose receptor, C type 1-like 1 cfa
CANINE_2:CFA.1849.1.A1_AT similar to mannose receptor, C type 1-like 1 cfa
CANINE_2:CFAAFFX.7698.1.S1_AT similar to mannose receptor, C type 1-like 1 cfa
CANINE_2:CFAAFFX.7700.1.S1_S_AT similar to mannose receptor, C type 1-like 1 cfa
CHICKEN:GGAAFFX.5438.1.S1_AT similar to Macrophage mannose receptor precursor (MMR) (CD206 antigen) gga
CHICKEN:GGAAFFX.5438.2.S1_AT similar to Macrophage mannose receptor precursor (MMR) (CD206 antigen) gga
HG-U95AV2:36908_AT mannose receptor, C type 1 hs
HG-U133_PLUS_2:204438_AT mannose receptor, C type 1 hs
HG-U133A:204438_AT mannose receptor, C type 1 hs
HG-FOCUS:204438_AT mannose receptor, C type 1 hs
HG-U133A_2:204438_AT mannose receptor, C type 1 hs
HUGENEFL:M93221_AT mannose receptor, C type 1 hs
U133_X3P:G4505244_3P_AT mannose receptor, C type 1 hs
MG-U74AV2:103226_AT mannose receptor, C type 1 mm
MU11KSUBB:Z11974_S_AT mannose receptor, C type 1 mm
MOE430A:1450430_AT mannose receptor, C type 1 mm
MOUSE430A_2:1450430_AT mannose receptor, C type 1 mm
MOUSE430_2:1450430_AT mannose receptor, C type 1 mm
MU19KSUBB:TC32774_S_AT Mannose receptor, C type 1 (Mrc1), mRNA mm
RAE230B:1392648_AT mannose receptor, C type 1 (predicted) rn
RAT230_2:1392648_AT mannose receptor, C type 1 (predicted) rn
RG-U34B:RC_AA957139_AT Mannose receptor, C type 1 (predicted) rn
RG-U34C:RC_AI234748_AT Mannose receptor, C type 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00670 C-type lectin protein 52 [Caenorhabditis elegans] ref|NP_501371.1| C-type LECtin family member (clec-52) [Caenorhabditis elegans] 0.0
blast AAB00670 C-type lectin protein 52 [Caenorhabditis elegans] ref|NP_501371.1| C-type LECtin family member (clec-52) [Caenorhabditis elegans] 1.0E-173
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 1.0E-161
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 1.0E-159
blast T29200 hypothetical protein T03F1.10 - Caenorhabditis elegans 1.0E-149
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.7E-14
Pfam IPR001304 EMBL-EBI C-type lectin 7.3E-17
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-14
Pfam IPR001304 EMBL-EBI C-type lectin 4.5E-7
Pfam IPR001304 EMBL-EBI C-type lectin 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:180562_AT
aactcaaaccggatcaaccgcctgtatgcaacttgagactggtacatctaaatggcaaac
tgcaaactgcacaactaaacttccattcatctgctctgcttctgccagtgcaatgccaac
tttcccagctgttacaattccaagtcattgtccatctggttacacttggtttgagctcac
cgatttttgctataaaaacactgttcaatacaccaatttcaatgatgctcgcagcgcttg
ccaagctgatggaggagatttggcttcaattcactcacttgcagagaacacattccttgt
tggtttttcaaaggctggctgtactaacaaggacaaggattggacaggtgatgtcttcat
tggtcttgtcttccaaaattcaaaatggcaatggactgatggatctgtagtagactatgt
taactggggagatggagaaccaaacaacatgaataaggaatggtggacttctttagttgc
tgatccacatcaaggcaaatacagtgaagcaagcagatggaacaacgtaccacaagacga
cca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCAAACCGGATCAACCGCCTGT 672 113 360 Antisense
AACCGCCTGTATGCAACTTGAGACT 661 145 375 Antisense
GCACAACTAAACTTCCATTCATCTG 361 317 428 Antisense
TCTGCTTCTGCCAGTGCAATGCCAA 603 609 454 Antisense
AACTTTCCCAGCTGTTACAATTCCA 318 139 477 Antisense
GGTTTGAGCTCACCGATTTTTGCTA 479 505 527 Antisense
TGGCTTCAATTCACTCACTTGCAGA 66 547 620 Antisense
GTTGGTTTTTCAAAGGCTGGCTGTA 241 437 658 Antisense
GTGATGTCTTCATTGGTCTTGTCTT 23 485 707 Antisense
GACTTCTTTAGTTGCTGATCCACAT 634 371 825 Antisense
GGAACAACGTACCACAAGACGACCA 496 527 878 Antisense
Sequence Source Affymetrix Proprietary Database