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[180559_at]

Description F56C3.4 /REP_DB=WormBase Gene ID /WP=CE17895 /TR=O61754 /GB=AAC17003.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.5
(-3)
A 		5
(0.8)
A 		4.6
(0.1)
A 		6.5
(3)
A 		4
B 3.5
(-2.1)
A 		4
(0)
A 		4.7
(3)
A 		3.3
(-3)
A 		1
C 3.2
(-1.4)
A 		5.2
(3)
A 		2.5
(-3)
A 		4
(0.3)
A 		3
avr 3.1
(-3) 		4.7
(3) 		3.9
(-0) 		4.6
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.9
(0.5)
A 		4
(-1.3)
A 		6.1
(3)
A 		3.2
(-3)
A 		3.8
(-1.8)
A 		3.6
(-2.2)
A 		3
B 4.4
(2.1)
A 		4.7
(3)
A 		3.6
(-0.1)
A 		3.2
(-1.3)
A 		3.3
(-1)
A 		2.6
(-3)
A 		2
C 2.5
(-3)
A 		3.7
(1)
A 		3.4
(0)
A 		4.3
(3)
A 		3.3
(-0.3)
A 		3
(-1.3)
A 		2
avr 3.9
(0.7) 		4.1
(1.6) 		4.4
(3) 		3.6
(-0.7) 		3.5
(-1.2) 		3.1
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(1)
A 		1.2
(3)
A 		1
(-1)
A 		0
B 1.1
(3)
A 		1
(1.5)
A 		1.1
(3)
A 		0.7
(-3)
A 		0
C 1.1
(0)
A 		1.5
(3)
A 		0.9
(-1.5)
A 		0.7
(-3)
A 		1
avr 1
(0) 		1.2
(3) 		1.1
(1.5) 		0.8
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.9
(-2)
A 		1.4
(3)
A 		1.3
(2)
A 		0.8
(-3)
A 		1.1
(0)
A 		0.9
(-2)
A 		1
B 1.5
(2.1)
A 		1.6
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.3
(0.4)
A 		1
(-2.1)
A 		1
C 0.9
(-3)
A 		1.1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.1
(3)
A 		1
(-0)
A 		0
avr 1.1
(-0.6) 		1.4
(3) 		1
(-1.8) 		0.9
(-3) 		1.2
(0.6) 		1
(-1.8) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18403
Sequence Type Exemplar sequence
Representative Public ID F56C3.4 NCBI
Target Description F56C3.4 /REP_DB=WormBase Gene ID /WP=CE17895 /TR=O61754 /GB=AAC17003.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075850 NCBI Caenorhabditis elegans F56C3.4 (F56C3.4) mRNA, complete cds. 11/11 None
SNAP00000017302 ENSEMBL cdna:SNAP chromosome:CEL140:X:1359715:1360687:-1 11/11 None
GENEFINDER00000017318 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1359715:1363992:-1 11/11 None
F56C3.4 ENSEMBL cdna:known chromosome:CEL140:X:1359715:1362031:-1 gene:F56C3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1359714-1362031(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C3.4
Entrez Gene 186363 Entrez gene
SwissProt O61754 EMBL-EBI
WormBase CE17895 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17003 Hypothetical protein F56C3.4 [Caenorhabditis elegans] ref|NP_508251.1| F56C3.4 [Caenorhabditis elegans] 0.0
blast AAC17003 Hypothetical protein F56C3.4 [Caenorhabditis elegans] ref|NP_508251.1| F56C3.4 [Caenorhabditis elegans] 1.0E-157
blast AAC17003 Hypothetical protein F56C3.4 [Caenorhabditis elegans] ref|NP_508251.1| F56C3.4 [Caenorhabditis elegans] 1.0E-152
blast AAC17002 Hypothetical protein F56C3.5 [Caenorhabditis elegans] ref|NP_508252.1| F56C3.5 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508251.1 1 123-142
F56C3.4 1 123-142
SNAP00000017302 1 68-87
GENEFINDER00000017318 1 280-299
Sequence
Target Sequence 
>C. ELEGANS:180559_AT
tgtactgctcactggccgtgaaaacaactgcagttgctccgtttattcatgatgcctcgg
gatcctctgaagcttgtggagctgtagagccgatcaatgttttggagaaaattggaatgg
tcgttgatatttccctaccgtcaaaggaaagcgtcaagaaagaacccgatagcactgcaa
cactttttgatgagtcatatgatggttctacttggttggatgtgttgatcacattcctgg
aacgtcactttgggcaaactgaaactaacattgcaactggaaactcagaaatcaaaggag
ccgagcaaccgacttggtggactagagctgttgcatatctgaaagaactgggaccggaga
ctgaaactgcaggaaatcttgtttctactccttgttctactttagaggaaaacaagtcgg
acaccaatggagctggggaaattgaaagagctcaagcaagtactgagccctcttcttcaa
aggaaatcaccgccgattcagctgccctgaaggagcaggcacttggcaccactgaccctg
actcggcaaaacagctcgcaccaaacaatgcagtccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACTGCTCACTGGCCGTGAAAAC 529 559 419 Antisense
GTTGCTCCGTTTATTCATGATGCCT 506 439 451 Antisense
ATGGTCGTTGATATTTCCCTACCGT 39 43 535 Antisense
GAACCCGATAGCACTGCAACACTTT 579 345 580 Antisense
ATTCCTGGAACGTCACTTTGGGCAA 370 7 651 Antisense
AGCCGAGCAACCGACTTGGTGGACT 35 83 717 Antisense
TTTCTACTCCTTGTTCTACTTTAGA 672 657 800 Antisense
CAAGCAAGTACTGAGCCCTCTTCTT 425 185 871 Antisense
AAAGGAAATCACCGCCGATTCAGCT 373 119 897 Antisense
TGACCCTGACTCGGCAAAACAGCTC 572 569 951 Antisense
AGCTCGCACCAAACAATGCAGTCCC 9 79 971 Antisense
Sequence Source Affymetrix Proprietary Database