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[180558_at]

Description K12D9.1 /REP_DB=WormBase Gene ID /WP=CE12180 /TR=P91387 /GB=AAG24159.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 29.1
(-3)
A 		53
(-0.9)
A 		95.8
(3)
A 		61.6
(-0.1)
A 		67
B 52.1
(0.5)
A 		68.1
(3)
A 		65.7
(2.6)
A 		30
(-3)
A 		38
C 60.7
(-0.1)
A 		65.5
(0.6)
A 		41.4
(-3)
A 		81.6
(3)
A 		40
avr 47.3
(-3) 		62.2
(1.4) 		67.6
(3) 		57.7
(0.1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 35.8
(-2.8)
A 		42.2
(-1.9)
A 		34.6
(-3)
A 		35.4
(-2.9)
A 		74.6
(3)
A 		46.5
(-1.2)
A 		40
B 42.4
(-1.4)
A 		73.3
(3)
A 		45.4
(-1)
A 		46.5
(-0.8)
A 		52.9
(0.1)
A 		31.1
(-3)
A 		42
C 25.1
(-1.8)
A 		69.7
(3)
A 		68.9
(2.9)
A 		62.9
(2.3)
A 		55.8
(1.5)
A 		14.1
(-3)
A 		56
avr 34.4
(-2.3) 		61.7
(3) 		49.6
(0.7) 		48.3
(0.4) 		61.1
(2.9) 		30.6
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.6
(-2.4)
A 		11.5
(-2.1)
A 		25
(3)
A 		9
(-3)
A 		16
B 16.6
(2.9)
A 		16.8
(3)
A 		15.2
(2.1)
A 		6.4
(-3)
A 		10
C 20.1
(3)
A 		18.8
(1.8)
A 		14.4
(-2.4)
A 		13.8
(-3)
A 		6
avr 15.8
(1.3) 		15.7
(1.2) 		18.2
(3) 		9.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.6
(-3)
A 		15
(0.2)
A 		7.5
(-2.7)
A 		9
(-2.1)
A 		22.5
(3)
A 		11.3
(-1.2)
A 		16
B 14.8
(-1.3)
A 		24.4
(3)
A 		11
(-3)
A 		12.3
(-2.4)
A 		21.5
(1.7)
A 		11.6
(-2.7)
A 		13
C 9.3
(-1.3)
A 		21.3
(3)
A 		17.5
(1.6)
A 		12.7
(-0.1)
A 		18
(1.8)
A 		4.7
(-3)
A 		17
avr 10.2
(-2.5) 		20.2
(2.7) 		12
(-1.5) 		11.3
(-1.9) 		20.7
(3) 		9.2
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15490
Sequence Type Exemplar sequence
Representative Public ID K12D9.1 NCBI
Target Description K12D9.1 /REP_DB=WormBase Gene ID /WP=CE12180 /TR=P91387 /GB=AAG24159.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071422 NCBI Caenorhabditis elegans K12D9.1 (K12D9.1) mRNA, complete cds. 11/11 None
SNAP00000022482 ENSEMBL cdna:SNAP chromosome:CEL140:V:3014343:3015861:1 11/11 None
GENEFINDER00000022489 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3013850:3015990:1 11/11 None
K12D9.1 ENSEMBL cdna:known chromosome:CEL140:V:3013850:3015861:1 gene:K12D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3013849-3015861(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12D9.1
Entrez Gene 187323 Entrez gene
SwissProt P91387 EMBL-EBI
WormBase CE12180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24159 Hypothetical protein K12D9.1 [Caenorhabditis elegans] ref|NP_503823.1| K12D9.1 [Caenorhabditis elegans] 0.0
blast AAB54246 Hypothetical protein R08F11.4 [Caenorhabditis elegans] ref|NP_504052.1| R08F11.4 [Caenorhabditis elegans] 1.0E-147
blast AAB54246 Hypothetical protein R08F11.4 [Caenorhabditis elegans] ref|NP_504052.1| R08F11.4 [Caenorhabditis elegans] 1.0E-142
blast CAE62457 Hypothetical protein CBG06551 [Caenorhabditis briggsae] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:180558_AT
ctccggcttgattccagcttttggaaatgggatcaaggagaagcttgaggatggaggttt
ccgagtattggatgttgggtgcggggaaggtttccactcctgcttgcttgctgaaaacta
ttccaaatctcaatttgttgggttagacatttgcgaaaaagctatcaaatccgcaaagtt
gaacaaaaaatccgatggatccgacttccagaacctagagtttgtggtaggggatgccat
gataatgccagaggactggactggttgcttcgatttggtggctttttttgggtctctaca
cgatcttttgcgccctgatctgagtttgcttgaagtgcatcgagtgctgaagccaggtgg
aatggtagtgctgactgaatccgatggaactagcaatgttttccaagatcgcgaagcttt
cggaaagatgtctgctctccagtacggtggctcaatgctccattgtctgccagtgggcag
taatagttcagatgcgatgggatatggctcgatgtggggacggaaaagagccaccgagct
catgactaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGGCTTGATTCCAGCTTTTGGA 396 233 564 Antisense
CACTCCTGCTTGCTTGCTGAAAACT 196 199 658 Antisense
GGATCCGACTTCCAGAACCTAGAGT 88 513 760 Antisense
GGACTGGTTGCTTCGATTTGGTGGC 50 521 821 Antisense
TTTTTTGGGTCTCTACACGATCTTT 92 675 847 Antisense
CGCCCTGATCTGAGTTTGCTTGAAG 247 257 874 Antisense
GTAGTGCTGACTGAATCCGATGGAA 709 451 928 Antisense
CGGAAAGATGTCTGCTCTCCAGTAC 145 243 984 Antisense
TCTCCAGTACGGTGGCTCAATGCTC 656 607 999 Antisense
TGCTCCATTGTCTGCCAGTGGGCAG 586 581 1019 Antisense
AAGAGCCACCGAGCTCATGACTAAG 153 155 1089 Antisense
Sequence Source Affymetrix Proprietary Database