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[180557_at]

Description F47G3.1 /REP_DB=WormBase Gene ID /WP=CE25892 /TR=Q9GYN6 /GB=AAF99952.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 41      6grp_total > 08      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 282.9
(3)
P 		149.8
(-1.5)
P 		122.8
(-2.4)
A 		104.4
(-3)
A 		179
B 245.1
(3)
P 		112.9
(-3)
A 		156.8
(-1)
P 		124.2
(-2.5)
P 		132
C 205.1
(3)
P 		199
(2.6)
P 		140.5
(-1.2)
P 		113.1
(-3)
P 		92
avr 244.4
(3) 		153.9
(-1.2) 		140
(-1.8) 		113.9
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 213.3
(3)
P 		176.2
(0.8)
P 		121.4
(-2.5)
P 		203.4
(2.4)
P 		119.5
(-2.6)
P 		113.4
(-3)
P 		100
B 225.6
(3)
P 		144
(-1.1)
P 		105.1
(-3)
P 		161.2
(-0.2)
P 		158.3
(-0.4)
P 		113.3
(-2.6)
P 		121
C 357.2
(3)
P 		171.4
(-0.6)
P 		196.5
(-0.1)
P 		115.5
(-1.7)
P 		159.4
(-0.8)
P 		46.8
(-3)
A 		310
avr 265.4
(3) 		163.9
(-0.5) 		141
(-1.3) 		160
(-0.6) 		145.7
(-1.1) 		91.2
(-3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 103
(3)
P 		32.5
(-1.8)
P 		32.1
(-1.9)
A 		15.3
(-3)
A 		88
B 78.2
(3)
P 		27.9
(-2.8)
A 		36.3
(-1.9)
P 		26.5
(-3)
P 		52
C 67.9
(3)
P 		57.2
(1.7)
P 		49
(0.7)
P 		19.1
(-3)
P 		49
avr 83
(3) 		39.2
(-1.2) 		39.1
(-1.2) 		20.3
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 39.3
(-0.9)
P 		62.6
(3)
P 		26.4
(-3)
P 		51.6
(1.2)
P 		36.1
(-1.4)
P 		27.6
(-2.8)
P 		36
B 78.5
(3)
P 		47.9
(-0.5)
P 		25.5
(-3)
P 		42.7
(-1.1)
P 		64.3
(1.4)
P 		42.2
(-1.1)
P 		53
C 132.4
(3)
P 		52.3
(-1.1)
P 		50
(-1.2)
P 		23.2
(-2.6)
P 		51.6
(-1.2)
P 		15.7
(-3)
A 		117
avr 83.4
(3) 		54.3
(-0.2) 		34
(-2.4) 		39.2
(-1.8) 		50.7
(-0.6) 		28.5
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18079
Sequence Type Exemplar sequence
Representative Public ID F47G3.1 NCBI
Target Description F47G3.1 /REP_DB=WormBase Gene ID /WP=CE25892 /TR=Q9GYN6 /GB=AAF99952.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076031 NCBI Caenorhabditis elegans F47G3.1 (F47G3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000042203 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2381584:2392591:1 9/11 None
SNAP00000042199 ENSEMBL cdna:SNAP chromosome:CEL140:X:2387295:2392591:1 10/11 None
F47G3.1 ENSEMBL cdna:known chromosome:CEL140:X:2385802:2392689:1 gene:F47G3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2387294-2392591(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G3.1
Entrez Gene 180543 Entrez gene
SwissProt Q9GYN6 EMBL-EBI
WormBase CE29327 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99952 Hypothetical protein F47G3.1 [Caenorhabditis elegans] ref|NP_508432.1| F47G3.1 [Caenorhabditis elegans] 0.0
blast CAE58885 Hypothetical protein CBG02118 [Caenorhabditis briggsae] 0.0
blast T29334 hypothetical protein F47G3.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.0E-10
Pfam IPR003348 EMBL-EBI Anion-transporting ATPase 3.3E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042203 2 5-22,128-145
Sequence
Target Sequence 
>C. ELEGANS:180557_AT
ttgggaatccggatttcctactgaaatctattattctttgaagtacatgaatcaaattga
ccccacagtcaacccggtttattttttgctacaaaaaatggcaaaaaaggatgaaaatgc
acttgaataccctcataaagtttttaaatttatcctccaaattcaggaatcagtgacatg
ggacattgtgagcgatcaaaacctaacttgcagctctgcagttatttttaatccgctaca
agtagatgcaactttccgatgggtggtttacaccaatacttcgctgtctactgtgcagca
aaagatttctgacaaagccggagttccgtcattcaaggtagaagttgattatacaaggga
actctatcaaacacgatgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGAATCCGGATTTCCTACTGAA 524 653 1575 Antisense
TCAAATTGACCCCACAGTCAACCCG 365 627 1626 Antisense
AAATGCACTTGAATACCCTCATAAA 320 119 1689 Antisense
TCAAAACCTAACTTGCAGCTCTGCA 249 629 1770 Antisense
GCTCTGCAGTTATTTTTAATCCGCT 386 299 1787 Antisense
GTAGATGCAACTTTCCGATGGGTGG 270 457 1816 Antisense
TGGTTTACACCAATACTTCGCTGTC 593 551 1838 Antisense
TACTTCGCTGTCTACTGTGCAGCAA 466 645 1851 Antisense
GATTTCTGACAAAGCCGGAGTTCCG 91 427 1878 Antisense
CCGGAGTTCCGTCATTCAAGGTAGA 383 265 1892 Antisense
GGGAACTCTATCAAACACGATGCAC 45 495 1931 Antisense
Sequence Source Affymetrix Proprietary Database