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[180556_at]

Description F20E11.1 /REP_DB=WormBase Gene ID /WP=CE18610 /TR=Q9XV83 /GB=CAB04142.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 26      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.7
(-3)
A 		6.1
(-1.4)
A 		2.2
(-2.8)
A 		17.8
(3)
A 		16
B 3.1
(-3)
A 		27.2
(3)
A 		3.9
(-2.8)
A 		12.5
(-0.7)
A 		24
C 2.7
(-2.6)
A 		13.9
(-0.5)
A 		0.5
(-3)
A 		32.3
(3)
A 		32
avr 2.5
(-2.9) 		15.7
(1.3) 		2.2
(-3) 		20.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.7
(-2.3)
A 		7.1
(-1.2)
A 		20.5
(3)
A 		1.3
(-3)
A 		2.7
(-2.6)
A 		1.4
(-3)
A 		19
B 4.2
(-2.1)
A 		3.8
(-2.2)
A 		11.2
(0.1)
A 		20.6
(3)
A 		5.2
(-1.8)
A 		1.3
(-3)
A 		19
C 8
(2.9)
A 		5.8
(1)
A 		1.3
(-3)
A 		2.2
(-2.2)
A 		8.1
(3)
A 		2.9
(-1.6)
A 		7
avr 5.3
(-0.8) 		5.6
(-0.6) 		11
(3) 		8
(1) 		5.3
(-0.8) 		1.9
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-3)
A 		1.3
(-0.9)
A 		0.6
(-3)
A 		2.6
(3)
A 		2
B 1
(-2.9)
A 		6.7
(3)
A 		0.9
(-3)
A 		2.7
(-1.1)
A 		6
C 0.9
(-2.2)
A 		4
(1.4)
A 		0.2
(-3)
A 		5.4
(3)
A 		5
avr 0.8
(-2.6) 		4
(3) 		0.6
(-3) 		3.6
(2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-2.4)
A 		2.5
(0.1)
A 		4.5
(3)
A 		0.3
(-3)
A 		0.8
(-2.3)
A 		0.3
(-3)
A 		4
B 1.5
(-1.8)
A 		1.3
(-2)
A 		2.7
(-0.4)
A 		5.5
(3)
A 		2.1
(-1.1)
A 		0.5
(-3)
A 		5
C 3
(3)
A 		1.8
(0.3)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		2.6
(2.1)
A 		1
(-1.4)
A 		3
avr 1.7
(0.5) 		1.9
(1.1) 		2.5
(3) 		2.1
(1.7) 		1.8
(0.8) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13849
Sequence Type Exemplar sequence
Representative Public ID F20E11.1 NCBI
Target Description F20E11.1 /REP_DB=WormBase Gene ID /WP=CE18610 /TR=Q9XV83 /GB=CAB04142.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075018 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-48) (srz-48) mRNA, complete cds. 11/11 None
GENEFINDER00000027642 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17457817:17462452:-1 10/11 None
F20E11.1 ENSEMBL cdna:known chromosome:CEL140:V:17461110:17462738:-1 gene:F20E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17461109-17462738(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-48
Ensembl F20E11.1
Entrez Gene 184729 Entrez gene
SwissProt Q9XV83 EMBL-EBI
WormBase CE18610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04142 Hypothetical protein F20E11.1 [Caenorhabditis elegans] ref|NP_507419.1| Serpentine Receptor, class Z family member (srz-48) [Caenorhabditis elegans] 1.0E-179
blast CAA16420 Hypothetical protein Y68A4A.2 [Caenorhabditis elegans] ref|NP_507354.2| Serpentine Receptor, class Z family member (srz-47) [Caenorhabditis elegans] 1.0E-138
blast CAB04142 Hypothetical protein F20E11.1 [Caenorhabditis elegans] ref|NP_507419.1| Serpentine Receptor, class Z family member (srz-48) [Caenorhabditis elegans] 1.0E-135
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-118
blast CAA16420 Hypothetical protein Y68A4A.2 [Caenorhabditis elegans] ref|NP_507354.2| Serpentine Receptor, class Z family member (srz-47) [Caenorhabditis elegans] 1.0E-113
blast CAA20966 Hypothetical protein Y102A5C.25 [Caenorhabditis elegans] ref|NP_507296.1| Serpentine Receptor, class Z family member (srz-54) [Caenorhabditis elegans] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.1E-37
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.1E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-18
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507419.1 7 25-47,67-89,104-126,153-170,190-212,232-254,264-286
F20E11.1 7 25-47,67-89,104-126,153-170,190-212,232-254,264-286
GENEFINDER00000027642 12 15-34,41-63,95-112,132-154,174-193,206-228,243-262,282-304,349-371,404-426,436-458,465-487
Sequence
Target Sequence 
>C. ELEGANS:180556_AT
aagatttttcatgtttcgtattcacagtttggaaacgcaatgcggcatttcagacggtat
ttcaaaatctaacttgggttgattttttctttttgatgacgtggtgtatcaatgacatta
tagtgtttatctcggcacttttatacattccaattttcatcagtgttcggaagcttgtga
atttacagtcagtccaacgttccaagccccataactatattttcttgcagacaatggttg
tttttacacttaaatcaatccatatcctcatatatataatgacgagccatggtggtaatt
tctctcctatattattcacgaattggataatagtgacagactttatcactactccattaa
ttgtccaaatgtcatacctgtcgtgcaacaagagaaacatgagcgttttattttcttcac
acagtattcgatattttttcaatgttttattccatttaaaaacgggtgctgttgtatttc
cacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATTTTTCATGTTTCGTATTCAC 183 155 491 Antisense
GCAATGCGGCATTTCAGACGGTATT 617 321 527 Antisense
GTGTTTATCTCGGCACTTTTATACA 78 487 613 Antisense
TCGGCACTTTTATACATTCCAATTT 499 605 622 Antisense
AGCCCCATAACTATATTTTCTTGCA 260 83 695 Antisense
CACTTAAATCAATCCATATCCTCAT 682 195 737 Antisense
GCCATGGTGGTAATTTCTCTCCTAT 329 281 776 Antisense
AATTTCTCTCCTATATTATTCACGA 166 175 787 Antisense
TATCACTACTCCATTAATTGTCCAA 199 661 834 Antisense
ATGTCATACCTGTCGTGCAACAAGA 680 47 859 Antisense
ACGGGTGCTGTTGTATTTCCACGTC 656 95 952 Antisense
Sequence Source Affymetrix Proprietary Database