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[180555_at]

Description C48B6.4 /REP_DB=WormBase Gene ID /WP=CE08806 /TR=O01508 /GB=AAC48164.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 31.6
(-0.9)
A 		45.4
(3)
M 		23.9
(-3)
A 		28.1
(-1.8)
A 		22
B 41.1
(-1.9)
A 		34.4
(-3)
A 		56.2
(0.5)
A 		71.7
(3)
A 		37
C 10.4
(-2.8)
A 		7.6
(-3)
A 		64.5
(1.7)
P 		80.2
(3)
P 		73
avr 27.7
(-3) 		29.1
(-2.7) 		48.2
(0.8) 		60
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 36.8
(-1.7)
A 		44.1
(-1.3)
A 		14
(-3)
A 		81.4
(0.8)
P 		61
(-0.3)
P 		119.7
(3)
P 		106
B 11.6
(-3)
A 		41.1
(-0.4)
P 		75.3
(2.7)
A 		25.2
(-1.8)
A 		41.3
(-0.3)
P 		78.6
(3)
P 		67
C 38.2
(-1.4)
A 		16.4
(-3)
A 		32.6
(-1.8)
A 		16
(-3)
A 		67.4
(0.8)
P 		98.2
(3)
P 		82
avr 28.9
(-3) 		33.9
(-2.6) 		40.6
(-2) 		40.9
(-2) 		56.6
(-0.6) 		98.8
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.5
(3)
A 		9.8
(1.6)
M 		6.2
(-1.3)
A 		4.1
(-3)
A 		7
B 13.1
(1.1)
A 		8.5
(-3)
A 		13
(1)
A 		15.3
(3)
A 		7
C 3.5
(-2.6)
A 		2.2
(-3)
A 		22.5
(3)
P 		13.5
(0.3)
P 		20
avr 9.4
(-0.8) 		6.8
(-3) 		13.9
(3) 		11
(0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.8
(-2.1)
A 		15.7
(-0.1)
A 		3
(-3)
A 		20.6
(1)
P 		18.4
(0.5)
P 		29.2
(3)
P 		26
B 4.1
(-3)
A 		13.7
(-0.7)
P 		18.3
(0.4)
A 		6.7
(-2.4)
A 		16.8
(0)
P 		29.3
(3)
P 		25
C 14.2
(-0.8)
A 		5
(-2.6)
A 		8.3
(-2)
A 		3.2
(-3)
A 		21.8
(0.8)
P 		32.9
(3)
P 		30
avr 8.4
(-3) 		11.5
(-2.2) 		9.9
(-2.6) 		10.2
(-2.5) 		19
(-0.1) 		30.5
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1873
Sequence Type Exemplar sequence
Representative Public ID C48B6.4 NCBI
Target Description C48B6.4 /REP_DB=WormBase Gene ID /WP=CE08806 /TR=O01508 /GB=AAC48164.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059567 NCBI Caenorhabditis elegans C48B6.4 (C48B6.4) mRNA, complete cds. 11/11 None
SNAP00000029802 ENSEMBL cdna:SNAP chromosome:CEL140:I:6897386:6899504:1 10/11 None
GENEFINDER00000029819 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6897386:6899504:1 10/11 None
C48B6.4 ENSEMBL cdna:known chromosome:CEL140:I:6897386:6899577:1 gene:C48B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6897316-6899508(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B6.4
Entrez Gene 183570 Entrez gene
SwissProt O01508 EMBL-EBI
WormBase CE08806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491968 C48B6.4 [Caenorhabditis elegans] gb|AAC48164.1| Hypothetical protein C48B6.4 [Caenorhabditis elegans] 0.0
blast CAE67292 Hypothetical protein CBG12743 [Caenorhabditis briggsae] 8.0E-32
blast CAE67292 Hypothetical protein CBG12743 [Caenorhabditis briggsae] 6.0E-27
Sequence
Target Sequence 
>C. ELEGANS:180555_AT
ggcggccaacgctagaaaggctctctacgaaaaatcttgctatttgggtttcctgacctc
ttcatcatctcagatctcactgtctggatgccaatcaagacaaattggcggagctgacga
agttgaaaatctcgttaaactggaaaccgaggaatttgatctacagaaatcgctcggctc
atatccaattcaatctcaaaaccgtctgaataatgtcattcaaatttatgccaacagtcc
agatccagaacagacacaagacttttggcaaatgattctacataaaggaattccaacaat
tcacactatatctgatttagacccggaagaaactgcaaactgtgcttcctattttcccta
cggcagtgaaagtgagaaatcatgcggaatttatactgttaaacgactcggaattgagac
tcaattatcgatgaacctgaagaaacagcaacttctgattttcaagatgggagagtctga
gtatcaaaatgttgttaatgtaactcatttccacgaaatcgtcaagaatcaggttactga
ttcgaaagttagaaacatcgaaataatcaatgagcatgtatcacgtcagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGCCAACGCTAGAAAGGCTCTC 306 541 1263 Antisense
ATCTTGCTATTTGGGTTTCCTGACC 385 31 1296 Antisense
CTCTTCATCATCTCAGATCTCACTG 176 231 1320 Antisense
AGATCTCACTGTCTGGATGCCAATC 389 67 1334 Antisense
TTGATCTACAGAAATCGCTCGGCTC 658 705 1418 Antisense
CGCTCGGCTCATATCCAATTCAATC 551 255 1433 Antisense
TATGCCAACAGTCCAGATCCAGAAC 566 657 1489 Antisense
ATTCCAACAATTCACACTATATCTG 629 7 1552 Antisense
AACTGCAAACTGTGCTTCCTATTTT 582 139 1593 Antisense
TCCTATTTTCCCTACGGCAGTGAAA 73 591 1609 Antisense
CAATGAGCATGTATCACGTCAGTCA 583 181 1830 Antisense
Sequence Source Affymetrix Proprietary Database