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[180554_at]

Description D1065.3 /REP_DB=WormBase Gene ID /WP=CE09053 /TR=O16193 /GB=AAG24023.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.3
(1)
A 		5.2
(3)
A 		3.1
(-1.7)
A 		2.5
(-3)
A 		3
B 1.8
(-3)
A 		10.5
(3)
A 		4.8
(-0.9)
A 		4.5
(-1.1)
A 		9
C 5.4
(-2.2)
A 		8.6
(2.2)
A 		4.8
(-3)
A 		9.2
(3)
A 		4
avr 3.8
(-3) 		8.1
(3) 		4.2
(-2.4) 		5.4
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.2
(2.7)
A 		1.9
(-3)
A 		4.7
(-0.5)
A 		5.8
(0.5)
A 		8.5
(3)
A 		5
(-0.2)
A 		7
B 3.3
(-3)
A 		3.3
(-3)
A 		22.4
(3)
A 		5.8
(-2.2)
A 		3.8
(-2.8)
A 		22.2
(2.9)
A 		19
C 2
(-3)
A 		5.1
(0.4)
A 		4.8
(0.1)
A 		4.4
(-0.4)
A 		7.5
(3)
A 		3.4
(-1.5)
A 		6
avr 4.5
(-2.1) 		3.4
(-3) 		10.6
(3) 		5.3
(-1.4) 		6.6
(-0.3) 		10.2
(2.7) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(3)
A 		1.1
(0.5)
A 		0.8
(-1)
A 		0.4
(-3)
A 		1
B 0.6
(-3)
A 		2.6
(3)
A 		1.1
(-1.5)
A 		1
(-1.8)
A 		2
C 1.8
(-1.7)
A 		2.5
(3)
A 		1.7
(-2.3)
A 		1.6
(-3)
A 		1
avr 1.3
(-1.4) 		2.1
(3) 		1.2
(-1.9) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-0.5)
A 		0.7
(-3)
A 		1
(-2.1)
A 		1.5
(-0.5)
A 		2.6
(3)
A 		1.2
(-1.4)
A 		2
B 1.1
(-3)
A 		1.1
(-3)
A 		5.4
(0.6)
A 		1.5
(-2.7)
A 		1.5
(-2.7)
A 		8.3
(3)
A 		7
C 0.7
(-3)
A 		1.6
(0.2)
A 		1.2
(-1.2)
A 		0.9
(-2.3)
A 		2.4
(3)
A 		1.1
(-1.6)
A 		2
avr 1.1
(-3) 		1.1
(-3) 		2.5
(0.5) 		1.3
(-2.5) 		2.2
(-0.3) 		3.5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15487
Sequence Type Exemplar sequence
Representative Public ID D1065.3 NCBI
Target Description D1065.3 /REP_DB=WormBase Gene ID /WP=CE09053 /TR=O16193 /GB=AAG24023.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071733(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071733 NCBI Caenorhabditis elegans D1065.3 (D1065.3) mRNA, complete cds. 9/11 None
SNAP00000024536 ENSEMBL cdna:SNAP chromosome:CEL140:V:4058784:4061906:-1 10/11 None
GENEFINDER00000024541 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4059368:4061906:-1 11/11 None
D1065.3 ENSEMBL cdna:known chromosome:CEL140:V:4059645:4061906:-1 gene:D1065.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4059367-4061906(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1065.3
Entrez Gene 183920 Entrez gene
SwissProt O16193 EMBL-EBI
WormBase CE36813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504134 D1065.3 [Caenorhabditis elegans] gb|AAG24023.2| Hypothetical protein D1065.3 [Caenorhabditis elegans] 0.0
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 2.0E-26
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 3.0E-26
blast CAE61105 Hypothetical protein CBG04861 [Caenorhabditis briggsae] 5.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-26
Sequence
Target Sequence 
>C. ELEGANS:180554_AT
gcagtgagtgctgccggtgataccttgcgttccactgtcaacgaagaatttcttagctca
gtggaaaaagcgaatgatggttttcaaaactgcatattcttgagaaattctagtttcgat
cttttgaaactgaaacaatttggcgagcaacagtcgatggttttagaaataataaaaggt
cttcgggaggcgaataagatgatcaaggaattaaaaaccgacttactttatcgaccggct
gacaaaattgataacttgaagcaattcaagaaaacttttgggactctccatgaatacatc
aatatgagtatgacgggtagcagcacaaatattaatcttattcaaatgttgttgaccact
acgcaagaaggcactctgtttttgaaaaccatcgaaagtgttgaaaagatggtaactgga
atgcaaacgttgaaaaatttatcgagcagcttgaaggccaactggacgcagaacgtaaca
ctgaaggaaatttttgaggaaatgaatttgcaagcggtttacgagtgccgagtgcttaag
ccgacttttggaaagaggctgaagccaaatgccgagatgctcttgtactgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTGAGTGCTGCCGGTGATACCT 73 311 1171 Antisense
ACCTTGCGTTCCACTGTCAACGAAG 467 85 1192 Antisense
GGCGAGCAACAGTCGATGGTTTTAG 177 541 1312 Antisense
ACCGACTTACTTTATCGACCGGCTG 237 87 1387 Antisense
GAAAACTTTTGGGACTCTCCATGAA 407 355 1440 Antisense
GAGTATGACGGGTAGCAGCACAAAT 201 397 1476 Antisense
GACCACTACGCAAGAAGGCACTCTG 13 385 1524 Antisense
GCAGCTTGAAGGCCAACTGGACGCA 71 311 1616 Antisense
GCAAGCGGTTTACGAGTGCCGAGTG 425 319 1680 Antisense
AGTGCCGAGTGCTTAAGCCGACTTT 368 59 1694 Antisense
TGCCGAGATGCTCTTGTACTGTTTC 449 585 1740 Antisense
Sequence Source Affymetrix Proprietary Database