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[180553_s_at]

Description Y48A6C.1 /REP_DB=WormBase Gene ID /WP=CE19196 /TR=Q9XWK8 /GB=CAA21651.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 87.5
(-0.3)
P 		170.2
(3)
P 		138.9
(1.7)
A 		21.3
(-3)
A 		149
B 86.8
(0.4)
P 		81.9
(-0.2)
P 		108
(3)
P 		59.3
(-3)
A 		49
C 45.9
(-3)
A 		126.1
(1.5)
P 		152.7
(3)
P 		50.6
(-2.7)
A 		107
avr 73.4
(-1) 		126.1
(2.5) 		133.2
(3) 		43.7
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 107.4
(0.5)
A 		131.9
(3)
P 		111.2
(0.9)
P 		116.1
(1.4)
A 		107
(0.5)
A 		72.9
(-3)
A 		59
B 100.3
(-0.7)
P 		126.9
(3)
P 		86.2
(-2.7)
P 		84
(-3)
A 		90
(-2.2)
A 		112.8
(1)
P 		43
C 90.6
(-1.1)
A 		150.8
(3)
P 		131.5
(1.7)
M 		95.4
(-0.8)
A 		63.2
(-3)
A 		106.8
(-0)
M 		88
avr 99.4
(-1.5) 		136.5
(3) 		109.6
(-0.2) 		98.5
(-1.6) 		86.7
(-3) 		97.5
(-1.7) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 31.9
(2.1)
P 		36.9
(3)
P 		36.3
(2.9)
A 		3.1
(-3)
A 		34
B 27.7
(3)
P 		20.2
(0)
P 		25
(1.9)
P 		12.6
(-3)
A 		15
C 15.2
(-2.1)
A 		36.2
(0.7)
P 		53.2
(3)
P 		8.5
(-3)
A 		45
avr 24.9
(0.3) 		31.1
(1.6) 		38.2
(3) 		8.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 19.8
(-2.6)
A 		46.9
(3)
P 		24.2
(-1.7)
P 		29.4
(-0.6)
A 		32.3
(0)
A 		17.7
(-3)
A 		29
B 34.9
(0.9)
P 		42.2
(3)
P 		20.9
(-3)
P 		22.2
(-2.6)
A 		36.6
(1.4)
A 		42.1
(3)
P 		21
C 33.6
(0.2)
A 		46
(3)
P 		33.5
(0.2)
M 		19.2
(-3)
A 		20.4
(-2.7)
A 		35.7
(0.7)
M 		27
avr 29.4
(-1.4) 		45
(3) 		26.2
(-2.3) 		23.6
(-3) 		29.8
(-1.3) 		31.8
(-0.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180553_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7051
Sequence Type Exemplar sequence
Representative Public ID Y48A6C.1 NCBI
Target Description Y48A6C.1 /REP_DB=WormBase Gene ID /WP=CE19196 /TR=Q9XWK8 /GB=CAA21651.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067029(11), NM_067032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067029 NCBI Caenorhabditis elegans Y48A6C.1 (Y48A6C.1) mRNA, complete cds. 11/11 A 
NM_067032 NCBI Caenorhabditis elegans Y48A6C.4 (Y48A6C.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000028339 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11101145:11116099:-1 11/11 None
SNAP00000028333 ENSEMBL cdna:SNAP chromosome:CEL140:III:11102345:11106011:-1 11/11 None
SNAP00000028337 ENSEMBL cdna:SNAP chromosome:CEL140:III:11119680:11123001:1 11/11 None
GENEFINDER00000028340 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11119680:11123001:1 11/11 None
Y48A6C.1 ENSEMBL cdna:known chromosome:CEL140:III:11101967:11107044:-1 gene:Y48A6C.1 11/11 A 
Y48A6C.4 ENSEMBL cdna:known chromosome:CEL140:III:11119680:11123001:1 gene:Y48A6C.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11101962-11107079(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y48A6C.1
Y48A6C.4
Entrez Gene 190013 Entrez gene
190016 Entrez gene
SwissProt Q9XWK8 EMBL-EBI
Q9XWK5 EMBL-EBI
WormBase CE28855 Wormbase
CE19199 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21651 Hypothetical protein Y48A6C.1 [Caenorhabditis elegans] ref|NP_499430.1| Y48A6C.1 [Caenorhabditis elegans] 0.0
blast CAA21654 Hypothetical protein Y48A6C.4 [Caenorhabditis elegans] ref|NP_499433.1| Y48A6C.4 [Caenorhabditis elegans] 1.0E-172
blast CAA21653 Hypothetical protein Y48A6C.3 [Caenorhabditis elegans] ref|NP_499432.1| Y48A6C.3 [Caenorhabditis elegans] 1.0E-169
Sequence
Target Sequence 
>C. ELEGANS:180553_S_AT
tccgcgctctaacgaatatcgtcacagaatttacgatataaatcgagaacgacacgtgga
tccttccaccctggaaatccgattcgaaaatgagaaaatcgagggaaaaagtgatttgaa
acgagtttttgtgcagaatcccgacgtgagcccattcgaatttggagttgtgagctcatc
gaaatccaatgcagtttcaccatttgagctgccggatgctttgctcaatttggcaaatgt
actggcgccaattatttcgaatatcgttctggaggatgctggtggtcaatttatgattca
aggtgtgaagctgatcgaatcaatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCGCTCTAACGAATATCGTCAC 94 597 1032 Antisense
CGAGAACGACACGTGGATCCTTCCA 169 251 1075 Antisense
ATCCTTCCACCCTGGAAATCCGATT 14 13 1091 Antisense
GAGTTTTTGTGCAGAATCCCGACGT 58 397 1154 Antisense
GAGCCCATTCGAATTTGGAGTTGTG 159 385 1179 Antisense
GGAGTTGTGAGCTCATCGAAATCCA 519 517 1195 Antisense
TCGAAATCCAATGCAGTTTCACCAT 295 601 1210 Antisense
TTTCACCATTTGAGCTGCCGGATGC 327 673 1226 Antisense
GCCGGATGCTTTGCTCAATTTGGCA 262 283 1242 Antisense
GCAAATGTACTGGCGCCAATTATTT 612 317 1264 Antisense
GTGTGAAGCTGATCGAATCAATCGT 164 487 1334 Antisense
Sequence Source Affymetrix Proprietary Database