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[180550_at]

Description F49H6.11 /REP_DB=WormBase Gene ID /WP=CE18720 /TR=Q9XV00 /GB=CAB04444.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 03      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 9.3
(-1.9)
A 		3.8
(-3)
A 		3.6
(-3)
A 		33.6
(3)
A 		30
B 11.3
(-2.2)
A 		5.5
(-2.9)
A 		4.1
(-3)
A 		61.6
(3)
P 		58
C 4.9
(-3)
A 		5.5
(-2.9)
A 		12.7
(-1.5)
A 		36.3
(3)
A 		31
avr 8.5
(-2.4) 		4.9
(-3) 		6.8
(-2.7) 		43.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 23.9
(-0.3)
A 		29.1
(0.3)
A 		3.1
(-2.8)
A 		38.6
(1.5)
A 		1.5
(-3)
A 		51.3
(3)
A 		50
B 18.6
(3)
A 		16.7
(2.3)
A 		3.5
(-2.9)
A 		5
(-2.3)
A 		3.2
(-3)
A 		11.4
(0.2)
A 		15
C 28.2
(1.8)
A 		23.8
(1)
A 		3.9
(-2.6)
A 		6.6
(-2.2)
A 		34.5
(3)
A 		2
(-3)
A 		33
avr 23.6
(3) 		23.2
(2.9) 		3.5
(-3) 		16.7
(0.9) 		13.1
(-0.1) 		21.6
(2.4) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.4
(0.8)
A 		0.8
(-3)
A 		1
(-2.7)
A 		4.9
(3)
A 		4
B 3.6
(-1.7)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		13.1
(3)
P 		12
C 1.6
(-3)
A 		1.6
(-3)
A 		4.4
(0.7)
A 		6.1
(3)
A 		5
avr 2.9
(-1.6) 		1.3
(-3) 		2.1
(-2.3) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.4
(-1)
A 		10.3
(1.9)
A 		0.7
(-2.9)
A 		9.8
(1.7)
A 		0.4
(-3)
A 		12.5
(3)
A 		12
B 6.5
(3)
A 		5.5
(1.9)
A 		0.8
(-3)
A 		1.3
(-2.5)
A 		1.3
(-2.5)
A 		4.2
(0.6)
A 		6
C 10.4
(2.5)
A 		7.3
(0.8)
A 		1
(-2.8)
A 		1.3
(-2.7)
A 		11.2
(3)
A 		0.7
(-3)
A 		11
avr 7.1
(2.5) 		7.7
(3) 		0.8
(-3) 		4.1
(-0.1) 		4.3
(0) 		5.8
(1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13430
Sequence Type Exemplar sequence
Representative Public ID F49H6.11 NCBI
Target Description F49H6.11 /REP_DB=WormBase Gene ID /WP=CE18720 /TR=Q9XV00 /GB=CAB04444.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074913 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-94) (srz-94) mRNA, complete cds. 11/11 None
F49H6.11 ENSEMBL cdna:known chromosome:CEL140:V:17035796:17038528:-1 gene:F49H6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17035795-17038528(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-94
Ensembl F49H6.11
Entrez Gene 186078 Entrez gene
SwissProt Q9XV00 EMBL-EBI
WormBase CE18720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04444 Hypothetical protein F49H6.11 [Caenorhabditis elegans] ref|NP_507314.1| Serpentine Receptor, class Z family member (srz-94) [Caenorhabditis elegans] 1.0E-177
blast CAA20970 Hypothetical protein Y102A5C.33 [Caenorhabditis elegans] ref|NP_507299.1| Serpentine Receptor, class Z family member (srz-95) [Caenorhabditis elegans] 1.0E-102
blast T22468 hypothetical protein F49H6.10 - Caenorhabditis elegans 1.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507314.1 7 20-42,62-79,102-124,154-173,188-210,234-256,261-283
F49H6.11 7 20-42,62-79,102-124,154-173,188-210,234-256,261-283
Sequence
Target Sequence 
>C. ELEGANS:180550_AT
attattgttctcgctggcaattatgagctatctaaaataccaatttccatacgacttttt
gtattcacaaaattatataagcaagtatgtcaggaattttaacgtgtttttcgttctaaa
ggattttgtatgtagtgcaatattagttcttcactttgagaaattgttgggcaacgagct
tatgaatatcacatcaggtttctatttggttttatacattgctgtgaacatgttcatatg
cttgctaaccccatttataaacatttctatcataactggtatgaagaaaaaccgacatct
acattcccaacaacacatttacatacaaaaatatatgtttatccagagcatcatggtttt
gtttttcaaaataattactgtaactatatctattccgattttttttgacgaaggctcggt
tttgttcgtaagctcaatgtctattgtggattttatggcaatgccactggttattcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTGTTCTCGCTGGCAATTATG 653 13 375 Antisense
TTTCCATACGACTTTTTGTATTCAC 492 669 418 Antisense
GTGCAATATTAGTTCTTCACTTTGA 527 479 509 Antisense
ATCACATCAGGTTTCTATTTGGTTT 226 27 562 Antisense
ATGTTCATATGCTTGCTAACCCCAT 402 47 604 Antisense
GCTAACCCCATTTATAAACATTTCT 81 227 618 Antisense
CAGAGCATCATGGTTTTGTTTTTCA 287 205 718 Antisense
GTAACTATATCTATTCCGATTTTTT 56 461 754 Antisense
GAAGGCTCGGTTTTGTTCGTAAGCT 701 331 784 Antisense
TGTTCGTAAGCTCAATGTCTATTGT 696 557 797 Antisense
TATGGCAATGCCACTGGTTATTCAG 407 655 828 Antisense
Sequence Source Affymetrix Proprietary Database