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[180549_at]

Description ZC317.2 /REP_DB=WormBase Gene ID /WP=CE15169 /TR=Q23075 /GB=AAB04960.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_total > 15      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 201.3
(3)
P 		123.1
(-1.9)
P 		105.7
(-3)
P 		120.2
(-2.1)
P 		96
B 157.3
(3)
P 		139.2
(0.8)
P 		108.1
(-3)
P 		117
(-1.9)
P 		49
C 193.6
(3)
P 		110.6
(-2.5)
P 		104.3
(-2.9)
P 		102.4
(-3)
P 		91
avr 184.1
(3) 		124.3
(-1.6) 		106
(-3) 		113.2
(-2.4) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 125.6
(3)
P 		117.4
(2.4)
P 		121
(2.7)
P 		90.2
(0.3)
P 		45.7
(-3)
M 		53.7
(-2.4)
P 		80
B 185.1
(2.5)
P 		198.2
(3)
P 		120.7
(-0.1)
P 		65.5
(-2.3)
P 		65
(-2.3)
P 		48.6
(-3)
P 		150
C 158
(2.2)
P 		177.4
(3)
P 		28.6
(-3)
A 		92
(-0.4)
A 		69.9
(-1.3)
P 		43.7
(-2.4)
P 		149
avr 156.2
(2.6) 		164.3
(3) 		90.1
(-0.9) 		82.6
(-1.2) 		60.2
(-2.4) 		48.7
(-3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 73.3
(3)
P 		26.7
(-2)
P 		27.6
(-1.9)
P 		17.6
(-3)
P 		56
B 50.2
(3)
P 		34.4
(-0.7)
P 		25.1
(-3)
P 		24.9
(-3)
P 		25
C 64.1
(3)
P 		31.8
(-1.1)
P 		36.3
(-0.6)
P 		17.3
(-3)
P 		47
avr 62.5
(3) 		31
(-1.4) 		29.7
(-1.6) 		19.9
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 23.2
(-0.9)
P 		41.8
(3)
P 		26.4
(-0.2)
P 		22.9
(-1)
P 		13.8
(-2.9)
M 		13.1
(-3)
P 		29
B 64.4
(2.8)
P 		66
(3)
P 		29.3
(-1.5)
P 		17.3
(-3)
P 		26.4
(-1.9)
P 		18.1
(-2.9)
P 		49
C 58.6
(3)
P 		54.1
(2.5)
P 		7.3
(-3)
A 		18.5
(-1.7)
A 		22.6
(-1.2)
P 		14.6
(-2.1)
P 		51
avr 48.7
(2.2) 		54
(3) 		21
(-2.1) 		19.6
(-2.3) 		20.9
(-2.1) 		15.3
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11645
Sequence Type Exemplar sequence
Representative Public ID ZC317.2 NCBI
Target Description ZC317.2 /REP_DB=WormBase Gene ID /WP=CE15169 /TR=Q23075 /GB=AAB04960.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072041 NCBI Caenorhabditis elegans ZC317.2 (ZC317.2) mRNA, complete cds. 11/11 None
SNAP00000026640 ENSEMBL cdna:SNAP chromosome:CEL140:V:5459989:5461223:1 11/11 None
GENEFINDER00000026650 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5459989:5461223:1 11/11 None
ZC317.2 ENSEMBL cdna:known chromosome:CEL140:V:5459918:5461235:1 gene:ZC317.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5459988-5461223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC317.2
Entrez Gene 191139 Entrez gene
SwissProt Q23075 EMBL-EBI
WormBase CE15169 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04960 Hypothetical protein ZC317.2 [Caenorhabditis elegans] ref|NP_504442.1| ZC317.2 [Caenorhabditis elegans] 1.0E-64
blast CAE64627 Hypothetical protein CBG09385 [Caenorhabditis briggsae] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504442.1 1 26-48
ZC317.2 1 26-48
SNAP00000026640 1 26-48
GENEFINDER00000026650 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:180549_AT
ttttccccggttattggaatgtcagaaagtattgctacacaaacctgtaattgtcactat
ccaattggtctagtgatattcctaattttcacaattataagcttattcgtgtgtatatgt
gtttgctgtattgatttgggagattgcaacatttgccaaggagatagcaaaaaagaagta
aagttccgtcgaacgtcaatgaacgctcgattcgttgagccgagcaagtttgtgattgat
aggaagctatccatggatccgtgtttactggagtatcgtcaactgtacaattcaggaagt
gcatcatccaactcttactccagatgcatcgaaaatccacagttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCCCGGTTATTGGAATGTCAG 244 675 25 Antisense
CAAACCTGTAATTGTCACTATCCAA 530 191 64 Antisense
GGTCTAGTGATATTCCTAATTTTCA 257 503 91 Antisense
ATGTGTTTGCTGTATTGATTTGGGA 427 49 141 Antisense
TCCGTCGAACGTCAATGAACGCTCG 655 591 209 Antisense
TGAACGCTCGATTCGTTGAGCCGAG 640 573 224 Antisense
GTTGAGCCGAGCAAGTTTGTGATTG 40 439 238 Antisense
GCTATCCATGGATCCGTGTTTACTG 690 303 270 Antisense
GGAGTATCGTCAACTGTACAATTCA 427 517 294 Antisense
ATCCAACTCTTACTCCAGATGCATC 205 41 330 Antisense
GATGCATCGAAAATCCACAGTTCTC 450 413 347 Antisense
Sequence Source Affymetrix Proprietary Database