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[180548_s_at]

Description Y40H7A.2 /REP_DB=WormBase Gene ID /WP=CE21813 /TR=Q9XWA1 /GB=CAA22065.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 25.1
(-3)
A 		57
(0.3)
A 		31.2
(-2.4)
A 		83.7
(3)
P 		59
B 50.3
(-1.5)
A 		62.3
(-0.2)
A 		35.7
(-3)
A 		92.7
(3)
P 		57
C 22.4
(-3)
A 		71.7
(-0.5)
A 		36.1
(-2.3)
A 		141
(3)
P 		119
avr 32.6
(-3) 		63.7
(-0.5) 		34.3
(-2.9) 		105.8
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 51.1
(0.7)
A 		47.8
(0.4)
A 		77.6
(3)
A 		8.5
(-3)
A 		9.8
(-2.9)
A 		36.2
(-0.6)
A 		69
B 50.5
(2.7)
A 		9
(-2.7)
A 		6.4
(-3)
A 		38.7
(1.1)
A 		42.9
(1.7)
A 		53.1
(3)
A 		47
C 6.5
(-3)
A 		62.7
(3)
A 		22.3
(-1.3)
A 		53.3
(2)
A 		50.5
(1.7)
A 		48.6
(1.5)
A 		56
avr 36
(-1.8) 		39.8
(0) 		35.4
(-2.1) 		33.5
(-3) 		34.4
(-2.6) 		46
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.2
(-1.6)
A 		12.4
(3)
A 		8.2
(-3)
A 		12.2
(2.7)
P 		4
B 16.1
(1.1)
A 		15.4
(0.7)
A 		8.3
(-3)
A 		19.8
(3)
P 		12
C 7.4
(-3)
A 		20.6
(1.8)
A 		12.6
(-1.1)
A 		23.8
(3)
P 		16
avr 10.9
(-2.2) 		16.1
(1.3) 		9.7
(-3) 		18.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.4
(-0.1)
A 		17
(3)
A 		16.9
(3)
A 		2.2
(-3)
A 		3
(-2.7)
A 		8.8
(-0.3)
A 		15
B 17.6
(2.3)
A 		3
(-2.5)
A 		1.6
(-3)
A 		10.2
(-0.2)
A 		17.4
(2.2)
A 		19.8
(3)
A 		18
C 2.4
(-3)
A 		19.1
(3)
A 		5.7
(-1.8)
A 		10.7
(-0)
A 		16.4
(2)
A 		16.3
(2)
A 		17
avr 9.8
(-1.3) 		13
(1.4) 		8.1
(-2.7) 		7.7
(-3) 		12.3
(0.8) 		15
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9685
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.2 NCBI
Target Description Y40H7A.2 /REP_DB=WormBase Gene ID /WP=CE21813 /TR=Q9XWA1 /GB=CAA22065.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070428(11), NM_070429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070428 NCBI Caenorhabditis elegans Y40H7A.2 (Y40H7A.2) mRNA, complete cds. 11/11 None
NM_070429 NCBI Caenorhabditis elegans Y40H7A.3 (Y40H7A.3) mRNA, complete cds. 11/11 None
Y40H7A.2 ENSEMBL cdna:known chromosome:CEL140:IV:15154758:15158946:1 gene:Y40H7A.2 11/11 None
Y40H7A.3 ENSEMBL cdna:known chromosome:CEL140:IV:15161119:15163678:-1 gene:Y40H7A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019396 8/11 Cross Hyb Matching Probes None
SNAP00000019397 8/11 Cross Hyb Matching Probes None
SNAP00000019398 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019412 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15156573-15158952(+) 82.51 82.51
chrIV:15161124-15163442(-) 76.95 76.95
Public Domain and Genome References
Gene Title

Ensembl Y40H7A.2
Y40H7A.3
Entrez Gene 189801 Entrez gene
189802 Entrez gene
SwissProt Q9XWA1 EMBL-EBI
Q9XWA3 EMBL-EBI
WormBase CE21813 Wormbase
CE21814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22065 Hypothetical protein Y40H7A.2 [Caenorhabditis elegans] ref|NP_502829.1| Y40H7A.2 [Caenorhabditis elegans] 1.0E-161
blast CAA22063 Hypothetical protein Y40H7A.3 [Caenorhabditis elegans] ref|NP_502830.1| Y40H7A.3 [Caenorhabditis elegans] 1.0E-143
blast CAA22063 Hypothetical protein Y40H7A.3 [Caenorhabditis elegans] ref|NP_502830.1| Y40H7A.3 [Caenorhabditis elegans] 1.0E-122
blast CAA22065 Hypothetical protein Y40H7A.2 [Caenorhabditis elegans] ref|NP_502829.1| Y40H7A.2 [Caenorhabditis elegans] 1.0E-122
blast CAE68104 Hypothetical protein CBG13744 [Caenorhabditis briggsae] 3.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180548_S_AT
gaaactctacgtccagaagccttttgtcctctgaaattgaaaattggaggagatggggat
agtggaaaagtcacttgtgatccgaaaagggcgaggaatgattgcactatgatgtctctt
ggcctgaatgatcaaattcaattcgatgaggaaatccagtcaatcaccgattatcgatgc
aatattattggtgcagatatggcaaggcaaaatgctacaacacaggaaaaatatgcaaaa
atgaaaggacaactgtttgttggcaatgtgccagatacattgaaattgtatcgcatgatg
attgactctgaatcaaaagaggtggaaattctaaaaatcgatattgaaagttcagaacac
gcggcacttgaaccattcttgaagaattattttgtgtgtcagattctgattgaaatacac
ggacttcctgccaagcaattggaaatgttaaggaaaatctcgagattgggtttccgaatg
ttcaacttcgaacgtaatccctcgtgtacaatatgttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCTACGTCCAGAAGCCTTTT 540 355 268 Antisense
AGAAGCCTTTTGTCCTCTGAAATTG 639 73 282 Antisense
GATTGCACTATGATGTCTCTTGGCC 385 433 367 Antisense
GATGTCTCTTGGCCTGAATGATCAA 96 409 378 Antisense
GAAATCCAGTCAATCACCGATTATC 529 361 418 Antisense
GAAAGTTCAGAACACGCGGCACTTG 328 359 613 Antisense
GCGGCACTTGAACCATTCTTGAAGA 308 293 628 Antisense
TGAAATACACGGACTTCCTGCCAAG 188 573 678 Antisense
CTCGAGATTGGGTTTCCGAATGTTC 33 231 726 Antisense
TCAACTTCGAACGTAATCCCTCGTG 651 629 749 Antisense
TAATCCCTCGTGTACAATATGTTGC 131 637 762 Antisense
Sequence Source Affymetrix Proprietary Database