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[180547_at]

Description F09B12.2 /REP_DB=WormBase Gene ID /WP=CE17644 /TR=O62144 /GB=CAB05476.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 74      6grp_total > 39      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 753.9
(2.9)
P 		758.6
(3)
P 		690.6
(1.9)
P 		379.8
(-3)
P 		379
B 762.2
(3)
P 		697.8
(2)
P 		606.1
(0.6)
P 		373.5
(-3)
P 		389
C 717.9
(3)
P 		713
(2.9)
P 		563.2
(0.3)
P 		378.9
(-3)
P 		339
avr 744.7
(3) 		723.1
(2.6) 		620
(1) 		377.4
(-3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 962.5
(3)
P 		658.5
(-0.6)
P 		466.2
(-2.8)
P 		449.5
(-3)
P 		742.5
(0.4)
P 		653.9
(-0.6)
P 		513
B 808.6
(3)
P 		678.1
(-0.7)
P 		630.4
(-2)
P 		595.2
(-3)
P 		663.1
(-1.1)
P 		683.2
(-0.5)
P 		213
C 594.1
(-2.1)
P 		605.9
(-1.7)
P 		562.8
(-3)
P 		619.7
(-1.3)
P 		615.4
(-1.5)
P 		766.9
(3)
P 		204
avr 788.4
(3) 		647.5
(-0.6) 		553.1
(-3) 		554.8
(-3) 		673.7
(0.1) 		701.3
(0.8) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 274.5
(3)
P 		164.7
(-0)
P 		180.5
(0.4)
P 		55.6
(-3)
P 		219
B 243
(3)
P 		172.3
(0.4)
P 		140.5
(-0.8)
P 		79.6
(-3)
P 		163
C 237.7
(3)
P 		205
(1.9)
P 		196.3
(1.6)
P 		63.9
(-3)
P 		174
avr 251.7
(3) 		180.7
(0.7) 		172.4
(0.4) 		66.4
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 177.4
(0.4)
P 		234.2
(3)
P 		101.5
(-3)
P 		114
(-2.4)
P 		224.1
(2.5)
P 		159.2
(-0.4)
P 		133
B 281.4
(3)
P 		225.7
(0.4)
P 		153.1
(-3)
P 		157.6
(-2.8)
P 		269.4
(2.4)
P 		254.8
(1.8)
P 		128
C 220.2
(1.3)
P 		184.9
(-0.3)
P 		143.2
(-2.2)
P 		124.6
(-3)
P 		199.1
(0.4)
P 		256.7
(3)
P 		132
avr 226.3
(2.7) 		214.9
(2) 		132.6
(-3) 		132.1
(-3) 		230.9
(3) 		223.6
(2.6) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18036
Sequence Type Exemplar sequence
Representative Public ID F09B12.2 NCBI
Target Description F09B12.2 /REP_DB=WormBase Gene ID /WP=CE17644 /TR=O62144 /GB=CAB05476.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078109 NCBI Caenorhabditis elegans F09B12.2 (F09B12.2) mRNA, complete cds. 11/11 None
SNAP00000031084 ENSEMBL cdna:SNAP chromosome:CEL140:X:15098104:15100321:-1 11/11 None
GENEFINDER00000031087 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15098104:15100321:-1 11/11 None
F09B12.2 ENSEMBL cdna:known chromosome:CEL140:X:15098020:15100321:-1 gene:F09B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15098103-15100321(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09B12.2
Entrez Gene 181606 Entrez gene
SwissProt O62144 EMBL-EBI
WormBase CE17644 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19507.1.S1_AT similar to zinc finger, DHHC domain containing 24 cfa
DROSOPHILA_2:1622933_AT dm
DROSOPHILA_2:1634822_A_AT dm
DROSGENOME1:147675_AT dm
HG-U133_PLUS_2:232091_S_AT zinc finger, DHHC-type containing 24 hs
HG-U133B:232091_S_AT zinc finger, DHHC-type containing 24 hs
HG-U133_PLUS_2:205634_X_AT zinc finger, DHHC-type containing 24 hs
HG-U133A:205634_X_AT zinc finger, DHHC-type containing 24 hs
HG-U133A_2:205634_X_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:G13236521_3P_X_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:G13236521_3P_A_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:HS.78768.4.A1_3P_A_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:HS.78768.3.A1_3P_X_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:HS.78768.3.A1_3P_A_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:227549_3P_X_AT zinc finger, DHHC-type containing 24 hs
U133_X3P:205634_3P_X_AT zinc finger, DHHC-type containing 24 hs
HG-U133_PLUS_2:227549_X_AT zinc finger, DHHC-type containing 24 hs
HG-U133B:227549_X_AT zinc finger, DHHC-type containing 24 hs
HG-U95E:78080_R_AT zinc finger, DHHC-type containing 24 hs
HG-U95D:80216_S_AT zinc finger, DHHC-type containing 24 hs
MG-U74BV2:116166_AT zinc finger, DHHC domain containing 24 mm
MOE430B:1428278_AT zinc finger, DHHC domain containing 24 mm
MOUSE430_2:1428278_AT zinc finger, DHHC domain containing 24 mm
MOE430B:1452719_AT zinc finger, DHHC domain containing 24 mm
MOUSE430_2:1452719_AT zinc finger, DHHC domain containing 24 mm
MU19KSUBA:TC20151_AT Leukocyte receptor cluster (LRC) member 4, mRNA (cDNA clone MGC:78021 IMAGE:3496514) mm
MU19KSUBA:TC22099_AT Leukocyte receptor cluster (LRC) member 4, mRNA (cDNA clone MGC:78021 IMAGE:3496514) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05476 Hypothetical protein F09B12.2 [Caenorhabditis elegans] ref|NP_510510.1| F09B12.2 [Caenorhabditis elegans] 1.0E-152
blast CAE63259 Hypothetical protein CBG07631 [Caenorhabditis briggsae] 1.0E-122
blast AAH76474 Zgc:91907 [Danio rerio] ref|NP_001002324.1| hypothetical protein LOC436596 [Danio rerio] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510510.1 5 28-50,60-82,147-169,179-201,206-228
F09B12.2 5 28-50,60-82,147-169,179-201,206-228
SNAP00000031084 5 28-50,60-82,147-169,179-201,206-228
GENEFINDER00000031087 5 28-50,60-82,147-169,179-201,206-228
Sequence
Target Sequence 
>C. ELEGANS:180547_AT
gtcattccatgtctccactaagagctcatcactgtccagtttgtgacgtgtgcatccttc
gccgtgaccaccattgttcgttcggggcagtttgcgtcgggcattttaatcagagatact
ttgtcgccgcagtcatcaacctcttcattatgactctgccactagtctcctactcatgga
gccttctcaatatcaaaatgacgaacgaaatcggcttcggaaacatttggcaagtggtca
ttccccatcttgcctggatcgccggatacatctcaatctaccaattcctccacgtccttc
tatttgtcttcaccttcaccgtttcgctgttcactttttacctgctgactgctcaagttt
tctgcatttatcagggacagacaagaatcgagtttttgatggacgttcacgcataccagc
tcggactccttgaaaacctccaccaatcgctcggctcccggtggccattcattgccattt
cttgcttcatcccaagtcctctgccaactgatggactcggctttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATTCCATGTCTCCACTAAGAGC 670 467 335 Antisense
CTAAGAGCTCATCACTGTCCAGTTT 377 227 352 Antisense
CAGTTTGTGACGTGTGCATCCTTCG 705 205 371 Antisense
CAACCTCTTCATTATGACTCTGCCA 77 187 471 Antisense
GCCACTAGTCTCCTACTCATGGAGC 131 277 492 Antisense
ATTTGGCAAGTGGTCATTCCCCATC 247 17 559 Antisense
TCGCCGGATACATCTCAATCTACCA 498 599 593 Antisense
CCTGCTGACTGCTCAAGTTTTCTGC 229 267 675 Antisense
TGATGGACGTTCACGCATACCAGCT 463 567 731 Antisense
ATTCATTGCCATTTCTTGCTTCATC 694 11 801 Antisense
GCCAACTGATGGACTCGGCTTTGTC 171 279 837 Antisense
Sequence Source Affymetrix Proprietary Database