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[180545_at]

Description F20E11.8 /REP_DB=WormBase Gene ID /WP=CE18617 /TR=Q9XV80 /GB=CAB04145.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 26      6grp_cgc > 93      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 34.3
(-0.2)
M 		26.7
(-2)
A 		22.2
(-3)
A 		48
(3)
A 		26
B 7.9
(-2.6)
A 		38
(3)
A 		12.2
(-1.8)
A 		5.6
(-3)
A 		32
C 20.3
(-3)
A 		62.7
(0.2)
P 		34.6
(-1.9)
A 		99.2
(3)
A 		79
avr 20.8
(-3) 		42.5
(1.3) 		23
(-2.6) 		50.9
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 35.4
(1.6)
P 		12.8
(-1.5)
A 		36.6
(1.8)
P 		45.4
(3)
A 		1.8
(-3)
A 		31.9
(1.1)
A 		44
B 17.5
(-0.5)
A 		35.8
(2.9)
M 		36.6
(3)
A 		5.8
(-2.6)
A 		27.9
(1.4)
A 		3.7
(-3)
A 		33
C 7.6
(-3)
A 		30.2
(-0.3)
A 		28.6
(-0.5)
A 		58
(3)
P 		18.3
(-1.7)
A 		16.1
(-2)
A 		50
avr 20.2
(-1.8) 		26.3
(0) 		33.9
(2.3) 		36.4
(3) 		16
(-3) 		17.2
(-2.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.5
(3)
M 		5.8
(-3)
A 		5.8
(-3)
A 		7
(-1.9)
A 		7
B 2.5
(-2)
A 		9.4
(3)
A 		2.8
(-1.8)
A 		1.2
(-3)
A 		8
C 6.7
(-3)
A 		18
(3)
P 		12
(-0.2)
A 		16.7
(2.3)
A 		11
avr 7.2
(-2.6) 		11.1
(3) 		6.9
(-3) 		8.3
(-1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.5
(0.3)
P 		4.6
(-0.8)
A 		8
(1.1)
P 		11.5
(3)
A 		0.5
(-3)
A 		7.8
(1)
A 		11
B 6.1
(-0.3)
A 		11.9
(3)
M 		8.9
(1.3)
A 		1.5
(-2.9)
A 		11.3
(2.7)
A 		1.4
(-3)
A 		11
C 2.8
(-3)
A 		9.2
(1.3)
A 		7.3
(0)
A 		11.7
(3)
P 		5.9
(-0.9)
A 		5.4
(-1.2)
A 		9
avr 5.1
(-2.7) 		8.6
(3) 		8.1
(2.2) 		8.2
(2.4) 		5.9
(-1.4) 		4.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13199
Sequence Type Exemplar sequence
Representative Public ID F20E11.8 NCBI
Target Description F20E11.8 /REP_DB=WormBase Gene ID /WP=CE18617 /TR=Q9XV80 /GB=CAB04145.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17449449:17454128:1 9/11 None
F20E11.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17450909:17452167:1 gene:F20E11.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027628 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17450908-17452101(+) 100.0 100.0
Public Domain and Genome References
Ensembl F20E11.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21159 hypothetical protein F20E11.8 - Caenorhabditis elegans 1.0E-139
blast CAB63200 Hypothetical protein F40D4.3 [Caenorhabditis elegans] ref|NP_507350.1| Serpentine Receptor, class H family member (srh-159) [Caenorhabditis elegans] 1.0E-112
blast T21155 hypothetical protein F20E11.3 - Caenorhabditis elegans 7.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.5E-78
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-78
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.5E-70
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027639 15 7-29,70-92,113-135,150-172,185-202,212-231,244-266,286-308,349-371,391-413,426-448,488-510,523-545,565-587,607-629
Sequence
Target Sequence 
>C. ELEGANS:180545_AT
ttatgtgggacttcctttacctgcagtaatgggcgcgaccatagtggtgtttctggaaga
tcgtcgatatcgattggttaacggtcaaaagtcaagcagcaacgtaagaaaatggtatcg
gttcttgtttgttgcattgaattatatttatgcaacaaaattccatgcgccgaaaagtca
gtgtattccagccgatttttttgatcatccaaacttttttttgcttgatcttaatggtaa
ctatattgccatttgcttgttattattgatcattattcttttttgccaaatgatgtttca
attcgggctgattttccgtcatttgctcaaaaatactcccgtttctagatgcacaattcg
tttacagcaacaattttttatcgcaatgagcatgcaagttatccttccgattgtcataat
tgcttttccagtttcctatatgctttattcaattgtatctggttattataatcaaggcgc
aaacaacctaacgttcatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGTGGGACTTCCTTTACCTGCA 469 679 306 Antisense
TGGGCGCGACCATAGTGGTGTTTCT 308 555 335 Antisense
GGTATCGGTTCTTGTTTGTTGCATT 480 505 419 Antisense
AATTCCATGCGCCGAAAAGTCAGTG 318 175 464 Antisense
AGTCAGTGTATTCCAGCCGATTTTT 350 61 481 Antisense
GCCGATTTTTTTGATCATCCAAACT 36 285 496 Antisense
AACTTTTTTTTGCTTGATCTTAATG 521 137 517 Antisense
GGTAACTATATTGCCATTTGCTTGT 60 503 541 Antisense
ATACTCCCGTTTCTAGATGCACAAT 639 23 638 Antisense
GCTTTTCCAGTTTCCTATATGCTTT 403 305 727 Antisense
GGCGCAAACAACCTAACGTTCATGA 150 543 781 Antisense
Sequence Source Affymetrix Proprietary Database