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[180544_s_at]

Description F42G2.4 /REP_DB=WormBase Gene ID /WP=CE10312 /TR=O17098 /GB=AAB70356.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 83      4grp_high_8_8 > 38      6grp_total > 73      4grp_total > 32      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 17.2
(-3)
P 		17.1
(-3)
A 		56.8
(2.5)
A 		60.8
(3)
A 		44
B 30.2
(-3)
A 		63.6
(2.2)
P 		65.8
(2.6)
P 		68.5
(3)
P 		38
C 31.3
(-3)
A 		74.2
(3)
P 		51.8
(-0.1)
P 		67.1
(2)
P 		43
avr 26.2
(-3) 		51.6
(0.9) 		58.1
(1.9) 		65.5
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 35.3
(-3)
A 		67.2
(-1.8)
P 		154.5
(1.6)
P 		191.6
(3)
P 		168.2
(2.1)
P 		108
(-0.2)
P 		156
B 44.4
(-3)
P 		62
(-1.8)
P 		116.9
(1.8)
P 		135.4
(3)
P 		114.6
(1.6)
P 		116.3
(1.7)
P 		91
C 59.3
(-3)
P 		60.4
(-2.9)
P 		124.5
(1.7)
P 		120.5
(1.4)
P 		142.3
(3)
P 		117.5
(1.2)
P 		83
avr 46.3
(-3) 		63.2
(-2) 		132
(2) 		149.2
(3) 		141.7
(2.6) 		113.9
(0.9) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.3
(-1.6)
P 		3.7
(-3)
A 		14.9
(3)
A 		8.9
(-0.2)
A 		11
B 9.6
(-3)
A 		15.7
(3)
P 		15.3
(2.6)
P 		14.6
(1.9)
P 		6
C 10.4
(-3)
A 		21.3
(3)
P 		18.1
(1.2)
P 		11.3
(-2.5)
P 		11
avr 8.8
(-3) 		13.6
(0.9) 		16.1
(3) 		11.6
(-0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.5
(-3)
A 		23.9
(-0.6)
P 		33.6
(0.7)
P 		48.6
(2.7)
P 		50.7
(3)
P 		26.3
(-0.3)
P 		44
B 15.4
(-3)
P 		20.6
(-2)
P 		28.4
(-0.5)
P 		35.9
(0.9)
P 		46.6
(3)
P 		43.4
(2.4)
P 		31
C 22
(-2.2)
P 		18.4
(-3)
P 		31.7
(-0.1)
P 		24.2
(-1.7)
P 		46
(3)
P 		39.3
(1.5)
P 		28
avr 14.6
(-3) 		21
(-1.8) 		31.2
(0) 		36.2
(0.9) 		47.8
(3) 		36.3
(0.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180544_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5654
Sequence Type Exemplar sequence
Representative Public ID F42G2.4 NCBI
Target Description F42G2.4 /REP_DB=WormBase Gene ID /WP=CE10312 /TR=O17098 /GB=AAB70356.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061869 NCBI Caenorhabditis elegans F42G2.4a (F42G2.4) mRNA, complete cds. 11/11 None
SNAP00000009888 ENSEMBL cdna:SNAP chromosome:CEL140:II:2409713:2411898:-1 11/11 None
GENEFINDER00000009895 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2409713:2415476:-1 11/11 None
F42G2.4a ENSEMBL cdna:known chromosome:CEL140:II:2409644:2415476:-1 gene:F42G2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173594 2 1 NM_061869 180544_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2409711-2415475(-) 100.0 100.0
Public Domain and Genome References
Ensembl F42G2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 0.0
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 0.0
blast AAT48621 Hypothetical protein F42G2.4b [Caenorhabditis elegans] ref|NP_872001.2| F42G2.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.9E-18
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.6E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.2E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-58
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.6E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.2E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-39
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.6E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.2E-5
Sequence
Target Sequence 
>C. ELEGANS:180544_S_AT
tgtttcgaagaatttgttttgccactggatcgattgttttctgttgaaaaatttacagtg
aatttaaggaatccagaaatcgtggggcaactactcacatacatggatccagtttcactg
agaaaaattgaatttggatctgaatacgtgaacagaccatggaaacaaattgagcttgat
aataaaattaatttatgcaatatggaacattggaagaatgcaaaggaattgactatcaac
aatacagtcgtgaaatgcgatgtagaggtcttgattcatttttcagaagttgacattata
ttggactcaatgttattgcaaaatgttgtatacttgaaagatacattcctctcgtctcca
acattctgccaattcaaagcccagtttgtgaacagtgatatcaatgagaccatatttgtt
gatactttcttgggagatccctcccgcagagtctccgatccttcgtcagggctacctaat
atttggtttttctcctacgctgatgttgacgaggatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTCGAAGAATTTGTTTTGCCAC 158 561 2425 Antisense
AGAATTTGTTTTGCCACTGGATCGA 249 75 2433 Antisense
GGAATCCAGAAATCGTGGGGCAACT 203 531 2492 Antisense
TGGGGCAACTACTCACATACATGGA 117 553 2507 Antisense
CATACATGGATCCAGTTTCACTGAG 552 213 2522 Antisense
ATACGTGAACAGACCATGGAAACAA 313 21 2568 Antisense
GCGATGTAGAGGTCTTGATTCATTT 139 291 2681 Antisense
GACCATATTTGTTGATACTTTCTTG 492 383 2832 Antisense
AATATTTGGTTTTTCTCCTACGCTG 700 169 2902 Antisense
TTTTCTCCTACGCTGATGTTGACGA 258 675 2912 Antisense
TACGCTGATGTTGACGAGGATCTTC 94 649 2920 Antisense
Sequence Source Affymetrix Proprietary Database