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[180542_at]

Description T19D2.1 /REP_DB=WormBase Gene ID /WP=CE07514 /TR=Q22580 /GB=AAA83600.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 43.9
(-3)
A 		201.9
(3)
P 		185.9
(2.4)
P 		78.6
(-1.7)
A 		158
B 41.7
(-2.5)
A 		225.6
(2.9)
P 		229.1
(3)
P 		26.5
(-3)
A 		203
C 40.2
(-2.7)
A 		245.8
(1.6)
A 		313.1
(3)
P 		25.5
(-3)
A 		288
avr 41.9
(-3) 		224.4
(2.5) 		242.7
(3) 		43.5
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 38.7
(-3)
A 		239.4
(3)
P 		91.6
(-1.4)
P 		148
(0.3)
A 		181.1
(1.3)
P 		119.5
(-0.6)
A 		201
B 22.6
(-3)
A 		178.3
(2)
P 		137.1
(0.7)
A 		210.4
(3)
P 		172
(1.8)
P 		60.1
(-1.8)
A 		188
C 12.2
(-3)
A 		162.7
(1.4)
P 		156.4
(1.3)
A 		190
(2.2)
P 		215.5
(3)
P 		71.8
(-1.2)
A 		203
avr 24.5
(-3) 		193.5
(3) 		128.4
(0.7) 		182.8
(2.6) 		189.5
(2.9) 		83.8
(-0.9) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 16
(-2.3)
A 		43.8
(2.2)
P 		48.6
(3)
P 		11.5
(-3)
A 		37
B 13.3
(-2.1)
A 		55.7
(3)
P 		53.1
(2.7)
P 		5.6
(-3)
A 		50
C 13.3
(-2.5)
A 		70.7
(0.8)
A 		109.1
(3)
P 		4.3
(-3)
A 		105
avr 14.2
(-2.3) 		56.7
(1.7) 		70.3
(3) 		7.1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 7.1
(-3)
A 		85.1
(3)
P 		20
(-2)
P 		37.5
(-0.7)
A 		54.6
(0.7)
P 		29.1
(-1.3)
A 		78
B 7.9
(-3)
A 		59.4
(2)
P 		33.3
(-0.5)
A 		55.7
(1.6)
P 		69.9
(3)
P 		22.4
(-1.6)
A 		62
C 4.5
(-3)
A 		49.7
(1.2)
P 		39.8
(0.2)
A 		38.2
(0.1)
P 		69.7
(3)
P 		24.1
(-1.2)
A 		65
avr 6.5
(-3) 		64.7
(3) 		31
(-0.5) 		43.8
(0.8) 		64.7
(3) 		25.2
(-1.1) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18345
Sequence Type Exemplar sequence
Representative Public ID T19D2.1 NCBI
Target Description T19D2.1 /REP_DB=WormBase Gene ID /WP=CE07514 /TR=Q22580 /GB=AAA83600.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076280 NCBI Caenorhabditis elegans T19D2.1 (T19D2.1) mRNA, complete cds. 11/11 None
SNAP00000037612 ENSEMBL cdna:SNAP chromosome:CEL140:X:3932835:3937662:1 9/11 None
T19D2.1 ENSEMBL cdna:known chromosome:CEL140:X:3932835:3937859:1 gene:T19D2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037617 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3932835-3937475(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D2.1
Entrez Gene 180675 Entrez gene
SwissProt Q22580 EMBL-EBI
WormBase CE30185 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83600 Hypothetical protein T19D2.1 [Caenorhabditis elegans] ref|NP_508681.2| T19D2.1 [Caenorhabditis elegans] 0.0
blast CAE68502 Hypothetical protein CBG14312 [Caenorhabditis briggsae] 0.0
blast CAE57226 Hypothetical protein CBG00091 [Caenorhabditis briggsae] 1.0E-130
blast CAE57226 Hypothetical protein CBG00091 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR001590 EMBL-EBI Peptidase M12B, ADAM/reprolysin 2.5E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 4.6E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 6.6E-13
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 6.6E-7
Pfam IPR001590 EMBL-EBI Peptidase M12B, ADAM/reprolysin 2.5E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 4.6E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.1E-10
Sequence
Target Sequence 
>C. ELEGANS:180542_AT
gacgttgcttggcgggagtatgtgctggagctctgcgtgaacgccagccatgcacacgac
catgtactggatctgaaagaccattaactacgtcaccgccgcagcagacgttcagaaata
gattcattgctccacttcctaacaggcaaaccaacatgattttacggaaagttgatcact
ggggaccatggtcagcttgcagtgtaacttgtggaaccgggcaaaagctcagaagacgag
aaaactgcatcgggcaagaatgtgccgaaaccggaccatgtgtaatgcaatcgtgtagag
aaaacaaaaatacttggacagaatggtcgcaatggtcagattgctctgtaaactgcggag
aaggagtgcaattcaggaagcgagcatgttttgcagccttttgccgtggaaaagacagcg
atgttagaaattgttatgggcagagatgctccgaaaccacaacacgtagaccacttgtaa
atagatctggtctttggacgggatggtcgtcctggtcctcttgcagcacaaagtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTGCTTGGCGGGAGTATGTGC 690 337 2000 Antisense
GTATGTGCTGGAGCTCTGCGTGAAC 369 455 2017 Antisense
CAGCCATGCACACGACCATGTACTG 204 203 2044 Antisense
GAAAGACCATTAACTACGTCACCGC 709 355 2074 Antisense
GAAATAGATTCATTGCTCCACTTCC 370 363 2114 Antisense
GCTCCACTTCCTAACAGGCAAACCA 365 297 2128 Antisense
GCGAGCATGTTTTGCAGCCTTTTGC 447 287 2379 Antisense
TGGGCAGAGATGCTCCGAAACCACA 342 683 2436 Antisense
CGAAACCACAACACGTAGACCACTT 639 249 2451 Antisense
TGGACGGGATGGTCGTCCTGGTCCT 215 545 2494 Antisense
CTGGTCCTCTTGCAGCACAAAGTGT 681 239 2511 Antisense
Sequence Source Affymetrix Proprietary Database