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[180541_s_at]

Description C24G6.6 /REP_DB=WormBase Gene ID /WP=CE17462 /TR=O76383 /GB=AAC19213.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 43      6grp_total > 41      4grp_total > 55      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2076
1 2 3 4 range
A 2117.3
(3)
P 		626.3
(-1.9)
P 		742.6
(-1.5)
P 		278.4
(-3)
P 		1839
B 2292.6
(3)
P 		468.8
(-2.3)
P 		757.9
(-1.4)
P 		216.2
(-3)
P 		2076
C 2067.8
(3)
P 		544.6
(-2)
P 		733.7
(-1.4)
P 		244.2
(-3)
P 		1824
avr 2159.2
(3) 		546.6
(-2.1) 		744.7
(-1.4) 		246.3
(-3) 		1913

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1377
1 2 3 4 5 6 range
A 1311.6
(0.6)
P 		1412.6
(1.1)
P 		1511
(1.6)
P 		1801.6
(3)
P 		1199.4
(0.1)
P 		551.3
(-3)
P 		1250
B 1217.2
(1.6)
P 		1118.4
(1)
P 		1463.8
(3)
P 		1314
(2.1)
P 		1060.3
(0.7)
P 		424.9
(-3)
P 		1039
C 1113.1
(0.1)
P 		1229.4
(0.6)
P 		1745.6
(3)
P 		1559.6
(2.1)
P 		1030.2
(-0.3)
P 		457.3
(-3)
P 		1288
avr 1214
(1) 		1253.5
(1.2) 		1573.5
(3) 		1558.4
(2.9) 		1096.6
(0.4) 		477.8
(-3) 		1096
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 730
1 2 3 4 range
A 770.9
(3)
P 		136
(-2.2)
P 		194.1
(-1.7)
P 		40.8
(-3)
P 		730
B 731.1
(3)
P 		115.8
(-2.4)
P 		175.6
(-1.9)
P 		46.1
(-3)
P 		685
C 684.5
(3)
P 		156.6
(-1.9)
P 		255.7
(-1)
P 		41.2
(-3)
P 		643
avr 728.8
(3) 		136.1
(-2.2) 		208.5
(-1.6) 		42.7
(-3) 		686

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 241.8
(-1.2)
P 		502.4
(3)
P 		329.1
(0.2)
P 		456.9
(2.3)
P 		361.9
(0.7)
P 		134.2
(-3)
P 		368
B 423.5
(2.8)
P 		372.3
(1.7)
P 		355.4
(1.3)
P 		348
(1.2)
P 		430.8
(3)
P 		158.4
(-3)
P 		272
C 412.6
(2.3)
P 		375.1
(1.6)
P 		444.3
(3)
P 		313.6
(0.3)
P 		333.3
(0.7)
P 		153.1
(-3)
P 		291
avr 359.3
(1.7) 		416.6
(3) 		376.3
(2.1) 		372.8
(2) 		375.3
(2.1) 		148.6
(-3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180541_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12211
Sequence Type Exemplar sequence
Representative Public ID C24G6.6 NCBI
Target Description C24G6.6 /REP_DB=WormBase Gene ID /WP=CE17462 /TR=O76383 /GB=AAC19213.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072055 NCBI Caenorhabditis elegans C24G6.6 (C24G6.6) mRNA, complete cds. 11/11 None
SNAP00000033920 ENSEMBL cdna:SNAP chromosome:CEL140:V:5512630:5515096:-1 11/11 None
GENEFINDER00000033931 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5512630:5515096:-1 11/11 None
C24G6.6.3 ENSEMBL cdna:known chromosome:CEL140:V:5512538:5515195:-1 gene:C24G6.6 11/11 None
C24G6.6.2 ENSEMBL cdna:known chromosome:CEL140:V:5512538:5515302:-1 gene:C24G6.6 11/11 None
C24G6.6.1 ENSEMBL cdna:known chromosome:CEL140:V:5512538:5516425:-1 gene:C24G6.6 11/11 None
C24G6.6.4 ENSEMBL cdna:known chromosome:CEL140:V:5512541:5516301:-1 gene:C24G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5512629-5515096(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24G6.6
Entrez Gene 178934 Entrez gene
SwissProt O76383 EMBL-EBI
WormBase CE17462 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12241_AT amine oxidase family protein at
ATH1-121501:253692_AT amine oxidase family protein at
CANINE:1589753_AT similar to polyamine oxidase isoform 1 cfa
CANINE_2:CFA.5800.1.A1_AT similar to polyamine oxidase isoform 1 cfa
CANINE_2:CFAAFFX.10136.1.S1_S_AT similar to polyamine oxidase isoform 1 cfa
CANINE_2:CFAAFFX.10137.1.S1_S_AT similar to polyamine oxidase isoform 1 cfa
CANINE_2:CFAAFFX.10173.1.S1_AT similar to polyamine oxidase isoform 1 cfa
DROSOPHILA_2:1631092_AT dm
DROSGENOME1:154799_AT dm
CHICKEN:GGA.9560.1.S1_AT spermine oxidase gga
HG-U133_PLUS_2:217074_AT spermine oxidase hs
HG-U133A_2:217074_AT spermine oxidase hs
HG-U133A:217074_AT spermine oxidase hs
HG-U95AV2:1650_G_AT spermine oxidase hs
HC-G110:1650_G_AT spermine oxidase hs
HG-U95AV2:1649_AT spermine oxidase hs
HC-G110:1649_AT spermine oxidase hs
HG-U133_PLUS_2:210357_S_AT spermine oxidase hs
HG-U133A:210357_S_AT spermine oxidase hs
HG-U133A_2:210357_S_AT spermine oxidase hs
HU35KSUBA:U61836_AT spermine oxidase hs
HUGENEFL:U61836_AT spermine oxidase hs
HU35KSUBB:RC_H93328_S_AT spermine oxidase hs
U133_X3P:G12653766_3P_A_AT spermine oxidase hs
U133_X3P:HS2.92374.4.S1_3P_S_AT spermine oxidase hs
HG-U133_PLUS_2:1555680_A_AT spermine oxidase hs
MG-U74BV2:109773_AT spermine oxidase mm
MG-U74CV2:135363_AT spermine oxidase mm
MOE430A:1424268_AT spermine oxidase mm
MOUSE430A_2:1424268_AT spermine oxidase mm
MOUSE430_2:1424268_AT spermine oxidase mm
MOE430B:1446509_AT spermine oxidase mm
MOUSE430_2:1446509_AT spermine oxidase mm
MU19KSUBB:TC26944_AT Spermine oxidase (Smox), mRNA mm
MU19KSUBB:TC34953_AT Spermine oxidase (Smox), mRNA mm
MU19KSUBB:TC34953_G_AT Spermine oxidase (Smox), mRNA mm
RG-U34B:RC_AA999064_AT spermine oxidase (predicted) rn
RAE230A:1374556_AT spermine oxidase (predicted) rn
RAT230_2:1374556_AT spermine oxidase (predicted) rn
RAE230B:1394621_AT spermine oxidase (predicted) rn
RAT230_2:1394621_AT spermine oxidase (predicted) rn
RAE230B:1392302_AT Spermine oxidase (predicted) rn
RAT230_2:1392302_AT Spermine oxidase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19213 Hypothetical protein C24G6.6 [Caenorhabditis elegans] ref|NP_504456.1| C24G6.6 [Caenorhabditis elegans] 0.0
blast CAE64621 Hypothetical protein CBG09379 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002937 EMBL-EBI Amine oxidase 5.4E-97
Sequence
Target Sequence 
>C. ELEGANS:180541_S_AT
gaggatcttgcaaggtgttcttcgaatgggaaactccattttggtcgaacaacacctact
ccatcgctcctctccctgttaagggaatgattagagataaactggatgcatttgaagatg
agactacgatccttcaagttgtcgactgggctccgaacgttctgagtgcatggtatgctg
gtagaggtcatcagttggtggataacatgtcggaggaagagttgaagcaaagaattacaa
aactgatgcgagacatgtacaacgacaaaagtattcccgagcctagcaagattatcagaa
ctcagctgaccaagaacgagttgcttctaggatcctattcctacatgactcaagtgcaag
cgctctcccatatttctcactctcaacttgcgattccagtgaaactggaaggaagaccaa
aggttctgtttgccggtgaagcaactcatcacagactattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATCTTGCAAGGTGTTCTTCGA 300 403 968 Antisense
TTTGGTCGAACAACACCTACTCCAT 290 667 1007 Antisense
TCGCTCCTCTCCCTGTTAAGGGAAT 687 597 1031 Antisense
GATGAGACTACGATCCTTCAAGTTG 391 409 1084 Antisense
TTCAAGTTGTCGACTGGGCTCCGAA 490 685 1100 Antisense
GGCTCCGAACGTTCTGAGTGCATGG 163 537 1116 Antisense
AAGTATTCCCGAGCCTAGCAAGATT 313 155 1236 Antisense
AACGAGTTGCTTCTAGGATCCTATT 320 145 1282 Antisense
ACATGACTCAAGTGCAAGCGCTCTC 287 107 1310 Antisense
GACCAAAGGTTCTGTTTGCCGGTGA 238 375 1382 Antisense
AGCAACTCATCACAGACTATTCCAA 187 77 1407 Antisense
Sequence Source Affymetrix Proprietary Database