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[180539_at]

Description C02H6.1 /REP_DB=WormBase Gene ID /WP=CE07857 /TR=O17053 /GB=AAB70308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 29.9
(-0.4)
A 		10.8
(-2.6)
A 		6.9
(-3)
A 		59.8
(3)
A 		53
B 22.4
(1.9)
A 		16.1
(-0.6)
A 		25.4
(3)
A 		9.7
(-3)
A 		16
C 33.4
(3)
A 		20.3
(-2.9)
A 		22.8
(-1.8)
A 		20.1
(-3)
A 		13
avr 28.6
(2.5) 		15.7
(-3) 		18.4
(-1.9) 		29.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 8.8
(-2.6)
A 		14.7
(-1.8)
A 		14.1
(-1.8)
A 		5.5
(-3)
A 		49.8
(3)
A 		33.2
(0.8)
A 		44
B 7.4
(-3)
A 		41.3
(3)
A 		8.4
(-2.8)
A 		7.4
(-3)
A 		14.7
(-1.7)
A 		14.9
(-1.7)
A 		34
C 13.6
(-1.6)
A 		37.2
(1.5)
A 		3.3
(-3)
A 		11.1
(-2)
A 		48.3
(3)
A 		8.2
(-2.3)
A 		45
avr 9.9
(-2.6) 		31.1
(1.7) 		8.6
(-2.9) 		8
(-3) 		37.6
(3) 		18.8
(-0.8) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.9
(3)
A 		2.3
(-2.7)
A 		1.8
(-3)
A 		8.7
(1.5)
A 		9
B 7.1
(3)
A 		4
(-0.7)
A 		5.9
(1.6)
A 		2.1
(-3)
A 		5
C 11.1
(3)
A 		5.8
(-1.1)
A 		8
(0.6)
A 		3.4
(-3)
A 		8
avr 9.7
(3) 		4
(-3) 		5.2
(-1.7) 		4.7
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		5.2
(-1.3)
A 		3.1
(-2.3)
A 		1.4
(-3)
A 		15
(3)
A 		8.1
(-0)
A 		14
B 2.6
(-2.7)
A 		13.7
(3)
A 		2.1
(-2.9)
A 		2
(-3)
A 		6
(-0.9)
A 		5.6
(-1.2)
A 		12
C 5
(-1.3)
A 		11.3
(1.3)
A 		0.8
(-3)
A 		2.2
(-2.4)
A 		15.6
(3)
A 		2.7
(-2.2)
A 		15
avr 3.1
(-2.3) 		10.1
(1.8) 		2
(-2.9) 		1.9
(-3) 		12.2
(3) 		5.5
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12108
Sequence Type Exemplar sequence
Representative Public ID C02H6.1 NCBI
Target Description C02H6.1 /REP_DB=WormBase Gene ID /WP=CE07857 /TR=O17053 /GB=AAB70308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072490 NCBI Caenorhabditis elegans C02H6.1 (C02H6.1) mRNA, complete cds. 11/11 None
SNAP00000024793 ENSEMBL cdna:SNAP chromosome:CEL140:V:7390982:7392193:-1 11/11 None
GENEFINDER00000024796 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7390982:7392463:-1 11/11 None
C02H6.1 ENSEMBL cdna:known chromosome:CEL140:V:7390982:7392463:-1 gene:C02H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7390982-7392464(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02H6.1
Entrez Gene 182129 Entrez gene
SwissProt O17053 EMBL-EBI
WormBase CE07857 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70308 Hypothetical protein C02H6.1 [Caenorhabditis elegans] ref|NP_504891.1| C02H6.1 [Caenorhabditis elegans] 0.0
blast AAB70308 Hypothetical protein C02H6.1 [Caenorhabditis elegans] ref|NP_504891.1| C02H6.1 [Caenorhabditis elegans] 1.0E-162
blast CAE72129 Hypothetical protein CBG19225 [Caenorhabditis briggsae] 1.0E-132
blast CAE72129 Hypothetical protein CBG19225 [Caenorhabditis briggsae] 1.0E-122
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504891.1 1 16-35
C02H6.1 1 16-35
GENEFINDER00000024796 1 16-35
Sequence
Target Sequence 
>C. ELEGANS:180539_AT
gattcctactacgatctcttcagaaaaactcttctcagtttttattactcgtatacctac
atttcgaaagattttgattggtatttgaaagcagatgatgataattattttatgatcgat
catcttaaagagtatctagatacactcgatgcttcgaaaccactgtttctgggatacaga
atgaaaccttttctggaagggggatataattcaggtggtgcgggatacctgttatcaaat
gctgcagttcggatctttgtggaacatctttatcatgatgagaaacgatgtccttatgat
tgggccgaagatcgaggaatagcgagatgcttggcttcaatgggaattttgccttctgat
acaagggacaatgatggtagctgtagatttctaccgttccgtccaagtgagatgcccgga
attcctgaagcctaccattattatccgttaaagaatggctcttttgtatccgaaaagttc
atctcacttcatcgaatttcgcctcggaaaatgatatttctagacagcattctctaccca
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCTACTACGATCTCTTCAGAA 670 433 430 Antisense
ACTCTTCTCAGTTTTTATTACTCGT 100 101 457 Antisense
GTATCTAGATACACTCGATGCTTCG 702 453 561 Antisense
GGTGGTGCGGGATACCTGTTATCAA 223 499 643 Antisense
AATGCTGCAGTTCGGATCTTTGTGG 314 167 667 Antisense
AGCTGTAGATTTCTACCGTTCCGTC 413 77 808 Antisense
CGTTCCGTCCAAGTGAGATGCCCGG 425 247 824 Antisense
TGAGATGCCCGGAATTCCTGAAGCC 95 569 837 Antisense
TGAAGCCTACCATTATTATCCGTTA 675 571 855 Antisense
CATCTCACTTCATCGAATTTCGCCT 687 211 909 Antisense
TTCTAGACAGCATTCTCTACCCAAG 506 691 947 Antisense
Sequence Source Affymetrix Proprietary Database