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[180538_s_at]

Description F43H9.3 /REP_DB=WormBase Gene ID /WP=CE07247 /TR=Q20377 /GB=AAA92305.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 39      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 228.2
(3)
P 		93.9
(-3)
A 		125.8
(-1.6)
A 		152.8
(-0.4)
P 		134
B 189
(3)
P 		150.1
(-1)
A 		130.1
(-3)
M 		145.7
(-1.4)
P 		59
C 217.1
(3)
P 		180.7
(-1)
A 		177
(-1.4)
P 		162.9
(-3)
P 		54
avr 211.4
(3) 		141.6
(-3) 		144.3
(-2.8) 		153.8
(-2) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 128.4
(-3)
P 		188.1
(0.6)
P 		172.1
(-0.4)
P 		194.8
(1)
P 		193.9
(0.9)
P 		227.9
(3)
P 		100
B 140
(-3)
P 		166.1
(-1.5)
P 		156.9
(-2)
P 		201.2
(0.4)
P 		201.8
(0.5)
P 		246.7
(3)
P 		107
C 135.1
(-3)
P 		206.9
(-0.2)
P 		157.3
(-2.1)
P 		189.6
(-0.9)
P 		175.7
(-1.4)
P 		291.4
(3)
P 		156
avr 134.5
(-3) 		187
(-0.4) 		162.1
(-1.6) 		195.2
(0) 		190.5
(-0.2) 		255.3
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 83.1
(3)
P 		20.4
(-3)
A 		32.9
(-1.8)
A 		22.4
(-2.8)
P 		63
B 60.3
(3)
P 		37.1
(-1.6)
A 		30.2
(-3)
M 		31
(-2.8)
P 		30
C 71.9
(3)
P 		51.9
(0.3)
A 		61.7
(1.6)
P 		27.5
(-3)
P 		44
avr 71.8
(3) 		36.5
(-1.7) 		41.6
(-1) 		27
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 23.7
(-3)
P 		66.9
(3)
P 		37.5
(-1.1)
P 		49.4
(0.6)
P 		58.5
(1.8)
P 		55.5
(1.4)
P 		43
B 48.7
(-1.8)
P 		55.3
(-1.1)
P 		38.1
(-3)
P 		53.3
(-1.3)
P 		82
(1.9)
P 		92
(3)
P 		54
C 50.1
(-1.8)
P 		63.1
(-0.5)
P 		40
(-2.8)
P 		38.1
(-3)
P 		56.8
(-1.1)
P 		97.5
(3)
P 		59
avr 40.8
(-2.7) 		61.8
(0.2) 		38.5
(-3) 		46.9
(-1.8) 		65.8
(0.8) 		81.7
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180538_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11614
Sequence Type Exemplar sequence
Representative Public ID F43H9.3 NCBI
Target Description F43H9.3 /REP_DB=WormBase Gene ID /WP=CE07247 /TR=Q20377 /GB=AAA92305.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072666 NCBI Caenorhabditis elegans F43H9.3 (F43H9.3) mRNA, complete cds. 11/11 None
SNAP00000036918 ENSEMBL cdna:SNAP chromosome:CEL140:V:8025944:8027089:-1 11/11 None
GENEFINDER00000036922 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8025944:8027588:-1 11/11 None
F43H9.3 ENSEMBL cdna:known chromosome:CEL140:V:8025857:8027437:-1 gene:F43H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8025944-8027438(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43H9.3
Entrez Gene 179181 Entrez gene
SwissProt Q20377 EMBL-EBI
WormBase CE07247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92305 Hypothetical protein F43H9.3 [Caenorhabditis elegans] ref|NP_505067.1| F43H9.3 [Caenorhabditis elegans] 0.0
blast CAE66155 Hypothetical protein CBG11386 [Caenorhabditis briggsae] 1.0E-179
blast AAA92305 Hypothetical protein F43H9.3 [Caenorhabditis elegans] ref|NP_505067.1| F43H9.3 [Caenorhabditis elegans] 1.0E-164
blast CAE66155 Hypothetical protein CBG11386 [Caenorhabditis briggsae] 1.0E-143
Sequence
Target Sequence 
>C. ELEGANS:180538_S_AT
attgtgcgatcaccgattcacactcttattcctgtggcttcgagcaatctgtgacaagtt
agaagttcggaacagcaaatatggacttctctcatcatatcatcttcttcttttagttgt
tcattttcttcaaagtgaacaggcactttctccgtggccagttctccctgtcctcgccaa
aactcatccgaatctcgttacctctgaaattccaatttcaaaagtggcagagctcatcaa
atcagaaaatccatgtttgagtgatttctcttggacttctcacaacaagatggcaatcag
tgaattaattattcgattcgttgactactacaatcacttcaatgcggccaaagaagcgat
ctacatcgagaaaggattagctttaaaacgcaaacaagtattcggagaagtacgacttca
attgattgatccatattctcccgtctctgtttgccgttcacatcacgcaagctccgcttt
ctttgctgctattcaatttatgcgaaaacagtttaaaaacgggcaaatgctcgcgagtct
acctgaagttccagaagcttcacagttccatggggaaaatcacttctcgtcgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTGCGATCACCGATTCACACTC 225 5 627 Antisense
TTCACACTCTTATTCCTGTGGCTTC 384 685 643 Antisense
GTGGCTTCGAGCAATCTGTGACAAG 318 491 660 Antisense
AAACTCATCCGAATCTCGTTACCTC 606 127 806 Antisense
ATCTCGTTACCTCTGAAATTCCAAT 216 31 818 Antisense
TGATTTCTCTTGGACTTCTCACAAC 282 565 888 Antisense
ACTACAATCACTTCAATGCGGCCAA 473 101 953 Antisense
AATTGATTGATCCATATTCTCCCGT 346 179 1046 Antisense
AAATGCTCGCGAGTCTACCTGAAGT 696 119 1151 Antisense
CAGAAGCTTCACAGTTCCATGGGGA 169 205 1178 Antisense
GGGAAAATCACTTCTCGTCGTGGAA 567 493 1199 Antisense
Sequence Source Affymetrix Proprietary Database