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[180537_s_at]

Description F18C5.4 /REP_DB=WormBase Gene ID /WP=CE02653 /TR=Q19547 /GB=AAA68412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 55      6grp_total > 84      4grp_total > 10      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4140
1 2 3 4 range
A 608.9
(-3)
P 		929.5
(-2.5)
P 		795.2
(-2.7)
P 		4688
(3)
P 		4079
B 643.7
(-3)
P 		802.6
(-2.7)
P 		764.3
(-2.8)
P 		4002.6
(3)
P 		3359
C 548.1
(-3)
P 		1146.1
(-1.9)
P 		852.7
(-2.4)
P 		3733.3
(3)
P 		3185
avr 600.2
(-3) 		959.4
(-2.4) 		804.1
(-2.7) 		4141.3
(3) 		3541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1598
1 2 3 4 5 6 range
A 1006.7
(-2.8)
P 		950.9
(-3)
P 		1339.8
(-1.5)
P 		2546.8
(3)
P 		1810
(0.2)
P 		1999.9
(0.9)
P 		1596
B 1083.7
(-2.3)
P 		961.1
(-2.9)
P 		948.7
(-3)
P 		2151.1
(3)
P 		1766.3
(1.1)
P 		1942
(2)
P 		1202
C 1108.4
(-2.5)
P 		985.8
(-3)
P 		1308.9
(-1.8)
P 		2541.9
(3)
P 		1729.2
(-0.1)
P 		1376
(-1.5)
P 		1556
avr 1066.3
(-2.6) 		965.9
(-3) 		1199.1
(-2) 		2413.3
(3) 		1768.5
(0.3) 		1772.6
(0.3) 		1447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 676
1 2 3 4 range
A 221.7
(-2.8)
P 		201.8
(-3)
P 		207.9
(-2.9)
P 		686.2
(3)
P 		484
B 205.3
(-2.7)
P 		198.2
(-2.8)
P 		177.1
(-3)
P 		853
(3)
P 		676
C 181.4
(-3)
P 		329.5
(-1)
P 		297.2
(-1.4)
P 		629.5
(3)
P 		448
avr 202.8
(-3) 		243.2
(-2.5) 		227.4
(-2.7) 		722.9
(3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 185.6
(-3)
P 		338.2
(-1)
P 		291.8
(-1.6)
P 		645.9
(3)
P 		546.2
(1.7)
P 		486.9
(0.9)
P 		460
B 377.1
(-1.2)
P 		319.9
(-1.9)
P 		230.4
(-3)
P 		569.8
(1.1)
P 		717.6
(2.9)
P 		724.1
(3)
P 		494
C 410.8
(-0.4)
P 		300.8
(-3)
P 		333.1
(-2.3)
P 		511.2
(1.9)
P 		559.5
(3)
P 		460.6
(0.7)
P 		259
avr 324.5
(-2.3) 		319.6
(-2.4) 		285.1
(-3) 		575.6
(2.4) 		607.8
(3) 		557.2
(2.1) 		323
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180537_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4435
Sequence Type Exemplar sequence
Representative Public ID F18C5.4 NCBI
Target Description F18C5.4 /REP_DB=WormBase Gene ID /WP=CE02653 /TR=Q19547 /GB=AAA68412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182224 NCBI Caenorhabditis elegans F18C5.10 (F18C5.10) mRNA, complete cds. 11/11 None
SNAP00000016658 ENSEMBL cdna:SNAP chromosome:CEL140:II:6559703:6561388:-1 11/11 None
GENEFINDER00000016672 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6559703:6561388:-1 11/11 None
F18C5.10.1 ENSEMBL cdna:known chromosome:CEL140:II:6559216:6561405:-1 gene:F18C5.10 11/11 None
F18C5.10.2 ENSEMBL cdna:known chromosome:CEL140:II:6559216:6561389:-1 gene:F18C5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6559699-6565095(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18C5.10
Entrez Gene 174082 Entrez gene
SwissProt Q8MQ73 EMBL-EBI
WormBase CE31790 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM98030 Hypothetical protein F18C5.10 [Caenorhabditis elegans] ref|NP_872024.1| F18C5.10 [Caenorhabditis elegans] 1.0E-157
blast T16088 hypothetical protein F18C5.4 - Caenorhabditis elegans 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872024.1 4 55-74,117-139,151-173,233-255
F18C5.10.1 4 55-74,117-139,151-173,233-255
F18C5.10.2 4 55-74,117-139,151-173,233-255
SNAP00000016658 4 55-74,117-139,151-173,233-255
GENEFINDER00000016672 4 55-74,117-139,151-173,233-255
Sequence
Target Sequence 
>C. ELEGANS:180537_S_AT
cacttgcaacaacagcttcacttctaaccatctacagtagtccacgtgatgtgttcaacc
gtgcagcaatggcagttattcgtgttttcgatttatgtgcattcatgttcatttctttcc
ttcttttcgctagaatttcatcagctgtcattatcaaccatacaactcaacactcacttc
gtgcagcttctcgtatttctgtaaatcttgtcaatgaccttggaaactcgctttcgtgca
ccgttgagccaagaggtgaactgccaatttgcagtcgtcaaatcattgattcaatcttcc
cagtacaagttatcgaatatcttatcattttgtgcattcttaccggagcttatatcggat
tggcctacctcatcgaatggtgcatccgtcacttcttcccaccaacccatgagaagctca
ccccaatcagtgcaatttctcgtaatcttttagtttcatctcgttgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTGCAACAACAGCTTCACTTCT 339 197 1631 Antisense
GCTTCACTTCTAACCATCTACAGTA 486 305 1645 Antisense
GTGATGTGTTCAACCGTGCAGCAAT 92 483 1676 Antisense
TACAACTCAACACTCACTTCGTGCA 241 643 1791 Antisense
TCGTGCAGCTTCTCGTATTTCTGTA 458 605 1809 Antisense
TGACCTTGGAAACTCGCTTTCGTGC 484 565 1845 Antisense
TTTCGTGCACCGTTGAGCCAAGAGG 428 667 1862 Antisense
TTTGTGCATTCTTACCGGAGCTTAT 174 667 1959 Antisense
TTATATCGGATTGGCCTACCTCATC 595 679 1980 Antisense
ATCGAATGGTGCATCCGTCACTTCT 457 37 2002 Antisense
TCTTTTAGTTTCATCTCGTTGCTCA 52 617 2076 Antisense
Sequence Source Affymetrix Proprietary Database