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[180536_at]

Description C27H5.6 /REP_DB=WormBase Gene ID /WP=CE01180 /TR=Q18269 /GB=AAC46654.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 56.4
(-0.6)
P 		24.2
(-2.5)
A 		14.9
(-3)
A 		117.2
(3)
P 		102
B 40
(1.6)
A 		21.1
(-3)
A 		29.5
(-1)
A 		45.7
(3)
A 		25
C 58.5
(0.7)
P 		37.1
(-0.7)
A 		2
(-3)
A 		92.6
(3)
P 		91
avr 51.6
(0.1) 		27.5
(-2) 		15.5
(-3) 		85.2
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 32.5
(-1.2)
A 		79.5
(1.6)
P 		103.8
(3)
P 		84.1
(1.8)
P 		54.3
(0.1)
P 		1.8
(-3)
A 		102
B 60.6
(1)
P 		67.3
(1.5)
P 		51.9
(0.4)
P 		87.6
(3)
P 		66
(1.4)
P 		6.1
(-3)
A 		82
C 57.7
(-0.5)
P 		95.2
(3)
P 		50.1
(-1.2)
A 		57.3
(-0.6)
A 		49.8
(-1.3)
P 		31.4
(-3)
M 		64
avr 50.3
(0.3) 		80.7
(3) 		68.6
(1.9) 		76.3
(2.6) 		56.7
(0.9) 		13.1
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.5
(3)
P 		5.2
(-2.5)
A 		3.9
(-3)
A 		17.2
(1.8)
P 		17
B 12.8
(3)
A 		5.2
(-3)
A 		6.8
(-1.7)
A 		9.7
(0.6)
A 		8
C 19.3
(3)
P 		10.7
(0.2)
A 		0.7
(-3)
A 		15.6
(1.8)
P 		19
avr 17.5
(3) 		7
(-1.6) 		3.8
(-3) 		14.2
(1.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6
(-1.8)
A 		28.3
(3)
P 		22.6
(1.8)
P 		21.3
(1.5)
P 		16.4
(0.4)
P 		0.4
(-3)
A 		28
B 21.1
(1.6)
P 		22.4
(1.9)
P 		12.6
(-0.5)
P 		23.2
(2.1)
P 		26.8
(3)
P 		2.3
(-3)
A 		25
C 21.4
(0.5)
P 		29
(3)
P 		12.8
(-2.3)
A 		11.5
(-2.7)
A 		16.1
(-1.2)
P 		10.5
(-3)
M 		19
avr 16.2
(0.2) 		26.6
(3) 		16
(0.1) 		18.7
(0.9) 		19.8
(1.2) 		4.4
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5060
Sequence Type Exemplar sequence
Representative Public ID C27H5.6 NCBI
Target Description C27H5.6 /REP_DB=WormBase Gene ID /WP=CE01180 /TR=Q18269 /GB=AAC46654.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063090(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063090 NCBI Caenorhabditis elegans C27H5.6 (C27H5.6) mRNA, complete cds. 10/11 None
C27H5.6 ENSEMBL cdna:known chromosome:CEL140:II:7185298:7187141:-1 gene:C27H5.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7185293-7187137(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27H5.6
Entrez Gene 182969 Entrez gene
SwissProt Q18269 EMBL-EBI
WormBase CE34715 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46654 Hypothetical protein C27H5.6 [Caenorhabditis elegans] ref|NP_495491.2| C27H5.6 [Caenorhabditis elegans] 1.0E-164
blast CAE67558 Hypothetical protein CBG13084 [Caenorhabditis briggsae] 1.0E-139
blast CAE60881 Hypothetical protein CBG04593 [Caenorhabditis briggsae] 6.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495491.2 7 15-37,49-71,94-116,137-159,179-201,222-244,254-276
C27H5.6 7 15-37,49-71,94-116,137-159,179-201,222-244,254-276
Sequence
Target Sequence 
>C. ELEGANS:180536_AT
aaaactcctcacattcattgcatttgttgtgtcctttgcttctccttcaataaacgatga
tcgaatgtgtgcagtaatgaattcaactggaattgtatatggaactattcattattgctg
gattgcatgctcgtacatgatagcttttgcagttacactcaacttatttctacgatccca
cggctccaaattcttgaatcacacagagaaacggaaacaaatggctattctaattttatc
cggtattaatgtattgatggtcagtgtgcctaattttgtgctggttgctgatcagtggca
ctccgatgagttcgacgtacttcttgttggtgttgcctatcttctctatggtttccaatc
ttgtttcaaccttcccatcttttactttttccgtctcgaattccgtcgccggtgccacga
acttctccgtttccgtcgtaacgggacaaacacaattgtgtcgaacgacatgagtcgcca
gaagctatcacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTCCTCACATTCATTGCATTT 246 131 531 Antisense
TGCATTTGTTGTGTCCTTTGCTTCT 458 579 549 Antisense
TCCTTTGCTTCTCCTTCAATAAACG 407 591 562 Antisense
ATTGCTGGATTGCATGCTCGTACAT 154 5 644 Antisense
GATAGCTTTTGCAGTTACACTCAAC 258 425 669 Antisense
TCCCACGGCTCCAAATTCTTGAATC 368 597 706 Antisense
TGTGCCTAATTTTGTGCTGGTTGCT 22 557 795 Antisense
GTGGCACTCCGATGAGTTCGACGTA 282 491 825 Antisense
CGACGTACTTCTTGTTGGTGTTGCC 23 253 843 Antisense
CTATGGTTTCCAATCTTGTTTCAAC 533 221 876 Antisense
ATGAGTCGCCAGAAGCTATCACGTG 9 45 1000 Antisense
Sequence Source Affymetrix Proprietary Database