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[180535_at]

Description C03G5.7 /REP_DB=WormBase Gene ID /WP=CE06760 /GEN=flp-5 /GB=AAK68683.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 41      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 46      6grp_total > 31      4grp_total > 20      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3945
1 2 3 4 range
A 3256.5
(0.1)
P 		2906.5
(-0.5)
P 		1541.3
(-3)
P 		4847.7
(3)
P 		3306
B 3527.2
(-0.2)
P 		2568.2
(-1.9)
P 		1956.9
(-3)
P 		5265.2
(3)
P 		3308
C 3562.7
(-0.1)
P 		2540.9
(-1.7)
P 		1754.1
(-3)
P 		5486.2
(3)
P 		3732
avr 3448.8
(-0) 		2671.9
(-1.4) 		1750.8
(-3) 		5199.7
(3) 		3449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1838
1 2 3 4 5 6 range
A 2158.9
(-1.8)
P 		2917.5
(1.3)
P 		3327.6
(3)
P 		2610.1
(0)
P 		2083.2
(-2.1)
P 		1871.8
(-3)
P 		1456
B 2598.3
(-1.2)
P 		3191.4
(1)
P 		3709.7
(3)
P 		2686.2
(-0.9)
P 		2227.9
(-2.7)
P 		2136.4
(-3)
P 		1573
C 2787.6
(1.7)
P 		2971.2
(3)
P 		2648.8
(0.6)
P 		2737.3
(1.3)
P 		2149.6
(-3)
P 		2411.3
(-1.1)
P 		822
avr 2514.9
(-0.9) 		3026.7
(1.9) 		3228.7
(3) 		2677.9
(-0) 		2153.6
(-2.9) 		2139.8
(-3) 		1089
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 783
1 2 3 4 range
A 1185.7
(3)
P 		630.9
(-1.3)
P 		402.9
(-3)
P 		709.6
(-0.6)
P 		783
B 1124.8
(3)
P 		634.3
(-1.4)
P 		453.5
(-3)
P 		1122
(3)
P 		671
C 1179.4
(3)
P 		730.5
(-1.7)
P 		611.3
(-3)
P 		925.1
(0.3)
P 		568
avr 1163.3
(3) 		665.2
(-1.4) 		489.2
(-3) 		918.9
(0.8) 		674

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 398
(-3)
P 		1037.6
(3)
P 		724.7
(0.1)
P 		662
(-0.5)
P 		628.6
(-0.8)
P 		455.7
(-2.5)
P 		640
B 904.1
(0.3)
P 		1062.3
(3)
P 		900.8
(0.2)
P 		711.5
(-3)
P 		905.2
(0.3)
P 		796.6
(-1.5)
P 		351
C 1033.2
(3)
P 		906.6
(1.4)
P 		674.2
(-1.5)
P 		550.5
(-3)
P 		695.6
(-1.2)
P 		807.2
(0.2)
P 		483
avr 778.4
(-0.7) 		1002.2
(3) 		766.6
(-0.9) 		641.3
(-3) 		743.1
(-1.3) 		686.5
(-2.2) 		361
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16187
Sequence Type Exemplar sequence
Representative Public ID C03G5.7 NCBI
Target Description C03G5.7 /REP_DB=WormBase Gene ID /WP=CE06760 /GEN=flp-5 /GB=AAK68683.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077044 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-5) (flp-5) mRNA, complete cds. 11/11 None
SNAP00000026289 ENSEMBL cdna:SNAP chromosome:CEL140:X:8528187:8530777:1 11/11 None
GENEFINDER00000026298 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8528187:8530777:1 11/11 None
C03G5.7 ENSEMBL cdna:known chromosome:CEL140:X:8528187:8531031:1 gene:C03G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8528185-8530776(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-5
Ensembl C03G5.7
Entrez Gene 181104 Entrez gene
SwissProt O61466 EMBL-EBI
WormBase CE06760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68683 Fmrf-like peptide protein 5 [Caenorhabditis elegans] ref|NP_509445.1| FMRF-Like Peptide family member (flp-5) [Caenorhabditis elegans] gb|AAC08942.1| FMRFamide-like peptide 5 [Caenorhabditis elegans] 6.0E-61
blast CAE74914 Hypothetical protein CBG22794 [Caenorhabditis briggsae] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.024
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 5.1
Sequence
Target Sequence 
>C. ELEGANS:180535_AT
tacgaaacagtcattcctcgcaactatgagcagccgaagcaccacgattgctttcctctt
catcgccacccttcttgtcttccaatgtgtttccgctcaatcaagtgccgaagacgcgga
ctaccttgaaaaataccaaagaatagcacgagcaccaaagccaaaattcatccgattcgg
tcgtgcaggagccaagtttatcagatttgggcgatcaaggaacacttgggaagatggata
cgcctcaccatcggtcaacgagctctacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGAAACAGTCATTCCTCGCAACT 68 649 60 Antisense
ATTCCTCGCAACTATGAGCAGCCGA 269 9 72 Antisense
AGCCGAAGCACCACGATTGCTTTCC 573 83 91 Antisense
CCTTCTTGTCTTCCAATGTGTTTCC 180 269 129 Antisense
ATGTGTTTCCGCTCAATCAAGTGCC 297 49 144 Antisense
AAGTGCCGAAGACGCGGACTACCTT 492 157 162 Antisense
GAATAGCACGAGCACCAAAGCCAAA 278 327 200 Antisense
AGCCAAAATTCATCCGATTCGGTCG 417 83 218 Antisense
GATTCGGTCGTGCAGGAGCCAAGTT 572 431 233 Antisense
AAGATGGATACGCCTCACCATCGGT 16 155 290 Antisense
ACCATCGGTCAACGAGCTCTACGTT 136 87 306 Antisense
Sequence Source Affymetrix Proprietary Database