[Home] | [Total List]

[180534_at]

Description Y62H9A.6 /REP_DB=WormBase Gene ID /WP=CE19242 /TR=Q9XWT3 /GB=CAA21562.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 27      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 37.1
(-0.6)
A 		51.6
(1.2)
A 		16.6
(-3)
A 		67.2
(3)
P 		51
B 42
(3)
A 		31.6
(1.3)
A 		5.4
(-3)
A 		26.3
(0.4)
A 		37
C 3.9
(-3)
A 		36.1
(3)
A 		26.4
(1.2)
A 		27
(1.3)
A 		32
avr 27.7
(-0.1) 		39.8
(2.9) 		16.1
(-3) 		40.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1082
1 2 3 4 5 6 range
A 2.1
(-3)
A 		11.1
(-2.9)
A 		36.3
(-2.8)
A 		17.7
(-2.9)
A 		902.8
(3)
P 		475.2
(0.2)
P 		901
B 7.9
(-3)
A 		12.2
(-3)
A 		30.9
(-2.9)
A 		31.1
(-2.9)
A 		984.7
(3)
P 		562.2
(0.4)
P 		977
C 4.1
(-3)
A 		42.4
(-2.8)
A 		4.8
(-3)
A 		35.4
(-2.8)
A 		1084.1
(3)
P 		536.4
(-0)
P 		1080
avr 4.7
(-3) 		21.9
(-2.9) 		24
(-2.9) 		28.1
(-2.9) 		990.5
(3) 		524.6
(0.2) 		986
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.5
(3)
A 		11.2
(1.5)
A 		4.3
(-3)
A 		9.8
(0.6)
P 		9
B 13.4
(3)
A 		7.8
(0.2)
A 		1.2
(-3)
A 		5.6
(-0.8)
A 		12
C 1.3
(-3)
A 		10.4
(3)
A 		9.2
(2.2)
A 		4.6
(-0.8)
A 		9
avr 9.4
(2.5) 		9.8
(3) 		4.9
(-3) 		6.7
(-0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 0.4
(-3)
A 		4
(-2.9)
A 		7.9
(-2.8)
A 		4.5
(-2.9)
A 		272.4
(3)
P 		115.7
(-0.5)
P 		272
B 2.8
(-3)
A 		4.1
(-3)
A 		7.5
(-2.9)
A 		8.2
(-2.9)
A 		400.1
(3)
P 		209.6
(0.1)
P 		397
C 1.5
(-3)
A 		12.9
(-2.8)
A 		1.2
(-3)
A 		7.1
(-2.9)
A 		350.8
(3)
P 		179.6
(0.1)
P 		350
avr 1.6
(-3) 		7
(-2.9) 		5.5
(-2.9) 		6.6
(-2.9) 		341.1
(3) 		168.3
(-0.1) 		340
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16179
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.6 NCBI
Target Description Y62H9A.6 /REP_DB=WormBase Gene ID /WP=CE19242 /TR=Q9XWT3 /GB=CAA21562.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077586 NCBI Caenorhabditis elegans Y62H9A.6 (Y62H9A.6) mRNA, complete cds. 11/11 A 
SNAP00000025458 ENSEMBL cdna:SNAP chromosome:CEL140:X:11883074:11883900:1 11/11 None
GENEFINDER00000025476 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11883074:11883900:1 11/11 None
Y62H9A.6 ENSEMBL cdna:known chromosome:CEL140:X:11883068:11883947:1 gene:Y62H9A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11883073-11883900(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.6
Entrez Gene 181365 Entrez gene
SwissProt Q9XWT3 EMBL-EBI
WormBase CE19242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21562 Hypothetical protein Y62H9A.6 [Caenorhabditis elegans] ref|NP_509987.1| Y62H9A.6 [Caenorhabditis elegans] 2.0E-73
blast CAE69408 Hypothetical protein CBG15570 [Caenorhabditis briggsae] 3.0E-29
blast CAE69410 Hypothetical protein CBG15572 [Caenorhabditis briggsae] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:180534_AT
tcttctgtcacttgctcttgtatgcaccgctgccgcttcctccggttacggaattccagc
caatgatgatcctagctactcaccaccagccaacgataatccaagctattctgcaccagc
aaattctgataatcgtttgtactacgactattcttctcgttccagctccagctctagcga
cagcagtgaagaaagagagtgcagaaaattgagagagtttgatcttccatcggaattgaa
atccatcggcgttaaagctaaattttctgaaatggaaagacgcggaaaaacctacacaac
aatctcttgccctagcaataccaaaacatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGTCACTTGCTCTTGTATGC 487 617 21 Antisense
GCTTCCTCCGGTTACGGAATTCCAG 442 303 55 Antisense
GAATTCCAGCCAATGATGATCCTAG 30 325 71 Antisense
CAATGATGATCCTAGCTACTCACCA 370 183 81 Antisense
ACCACCAGCCAACGATAATCCAAGC 598 85 102 Antisense
AATCCAAGCTATTCTGCACCAGCAA 387 167 118 Antisense
GTACTACGACTATTCTTCTCGTTCC 119 461 159 Antisense
CTCCAGCTCTAGCGACAGCAGTGAA 112 237 186 Antisense
TTGAGAGAGTTTGATCTTCCATCGG 43 705 229 Antisense
ATTGAAATCCATCGGCGTTAAAGCT 418 5 255 Antisense
TGCCCTAGCAATACCAAAACATATG 636 583 328 Antisense
Sequence Source Affymetrix Proprietary Database