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[180533_at]

Description T09D3.3 /REP_DB=WormBase Gene ID /WP=CE13481 /TR=Q23036 /GB=AAG24196.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 19
(1.2)
A 		3.7
(-3)
A 		18.3
(1)
A 		25.5
(3)
A 		22
B 3.4
(-3)
A 		44.3
(2.3)
A 		5.4
(-2.7)
A 		49.6
(3)
A 		46
C 7.3
(-3)
A 		27.4
(-0.9)
A 		23.9
(-1.2)
A 		64.2
(3)
A 		57
avr 9.9
(-3) 		25.1
(-0.5) 		15.9
(-2) 		46.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.4
(3)
A 		4.1
(-2.8)
A 		2.3
(-3)
A 		36
(1.3)
A 		4.1
(-2.8)
A 		16.2
(-1.2)
A 		47
B 6.7
(-2.6)
A 		36.3
(2.8)
A 		4.6
(-3)
A 		24.3
(0.6)
A 		8.8
(-2.2)
A 		37.2
(3)
A 		33
C 22.4
(0.6)
A 		21.7
(0.5)
A 		34.8
(3)
A 		16.8
(-0.5)
A 		3.8
(-3)
A 		31.1
(2.3)
A 		31
avr 26.2
(2.5) 		20.7
(1) 		13.9
(-0.8) 		25.7
(2.3) 		5.6
(-3) 		28.2
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.9
(3)
A 		0.8
(-3)
A 		4.8
(0.9)
A 		3.7
(-0.1)
A 		6
B 1.1
(-3)
A 		10.9
(3)
A 		1.2
(-2.9)
A 		10.6
(2.8)
A 		10
C 2.4
(-3)
A 		7.9
(0.9)
A 		8.3
(1.2)
A 		10.8
(3)
A 		8
avr 3.5
(-3) 		6.5
(0.7) 		4.8
(-1.4) 		8.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.1
(3)
A 		1.5
(-2.3)
A 		0.5
(-3)
A 		9.1
(3)
A 		1.2
(-2.5)
A 		4
(-0.6)
A 		9
B 2.3
(-2.4)
A 		12.1
(2.2)
A 		1.1
(-3)
A 		6.4
(-0.5)
A 		3.6
(-1.8)
A 		13.9
(3)
A 		13
C 8.3
(1.6)
A 		6.6
(0.5)
A 		8.9
(2)
A 		3.4
(-1.6)
A 		1.2
(-3)
A 		10.4
(3)
A 		9
avr 6.6
(0.7) 		6.7
(0.8) 		3.5
(-1.8) 		6.3
(0.5) 		2
(-3) 		9.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12173
Sequence Type Exemplar sequence
Representative Public ID T09D3.3 NCBI
Target Description T09D3.3 /REP_DB=WormBase Gene ID /WP=CE13481 /TR=Q23036 /GB=AAG24196.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072024 NCBI Caenorhabditis elegans T09D3.3 (T09D3.3) mRNA, complete cds. 11/11 None
SNAP00000010226 ENSEMBL cdna:SNAP chromosome:CEL140:V:5346306:5349383:-1 11/11 None
GENEFINDER00000010232 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5346068:5350917:-1 11/11 None
T09D3.3 ENSEMBL cdna:known chromosome:CEL140:V:5346431:5349383:-1 gene:T09D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5346430-5349383(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09D3.3
Entrez Gene 188324 Entrez gene
SwissProt Q23036 EMBL-EBI
WormBase CE13481 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504425 T09D3.3 [Caenorhabditis elegans] gb|AAG24196.1| Hypothetical protein T09D3.3 [Caenorhabditis elegans] 0.0
blast CAE64639 Hypothetical protein CBG09401 [Caenorhabditis briggsae] 0.0
blast CAE64639 Hypothetical protein CBG09401 [Caenorhabditis briggsae] 1.0E-177
blast CAE64639 Hypothetical protein CBG09401 [Caenorhabditis briggsae] 1.0E-154
blast AAK39235 Hypothetical protein F47F2.3 [Caenorhabditis elegans] ref|NP_508673.2| F47F2.3 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:180533_AT
atcaccaccagttattagaccttcttattggacaaaacatcgagtgaagtcaacgaaaga
accaaaaactacaatattcacaacaactccagtgccatgccccacgaccacatctacgac
aacaagtgcaactacactagttccaaccacatctagttctacaactactacaacaactac
tacaccagtacccgttacatctacaacaactgaacctactacgacaacatatacaacttc
aactagtactagcaccacaactacacttccaccgacaacatccaccccaaaaattgtggt
taacctaactcctatctatccggatatgttaatgaaagcaaacaaagttccaatgatacc
agcctacggaatttggacaattccgccccatgtaccaccctcttcaaaagaatttgataa
cccattgagtggaataaaaacctcgccaactgaaaagcggaattctattggtgatattcg
cgggagacatgttatccggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCACCAGTTATTAGACCTTCT 693 27 1248 Antisense
ATTCACAACAACTCCAGTGCCATGC 573 11 1323 Antisense
ACGACCACATCTACGACAACAAGTG 516 91 1351 Antisense
GTGCAACTACACTAGTTCCAACCAC 685 479 1373 Antisense
GTTCCAACCACATCTAGTTCTACAA 141 441 1387 Antisense
ACAACTGAACCTACTACGACAACAT 278 111 1453 Antisense
ACGACAACATATACAACTTCAACTA 201 91 1468 Antisense
TCAACTAGTACTAGCACCACAACTA 308 631 1486 Antisense
GTTAACCTAACTCCTATCTATCCGG 625 407 1546 Antisense
AAAGTTCCAATGATACCAGCCTACG 213 123 1591 Antisense
TTCGCGGGAGACATGTTATCCGGTC 482 695 1724 Antisense
Sequence Source Affymetrix Proprietary Database