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[180532_s_at]

Description Y70D2A.2 /REP_DB=WormBase Gene ID /WP=CE22833 /TR=Q9XW90 /GB=CAA22078.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 53      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 187.9
(3)
A 		164.5
(1.7)
A 		83.4
(-3)
A 		85.4
(-2.9)
A 		105
B 227.4
(3)
P 		187.1
(1.8)
A 		116.3
(-0.2)
A 		17.8
(-3)
A 		210
C 191.3
(3)
M 		98.4
(-0.2)
A 		119.6
(0.5)
A 		18.1
(-3)
A 		173
avr 202.2
(3) 		150
(1.1) 		106.4
(-0.6) 		40.4
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 101.5
(-2.7)
A 		96.9
(-2.9)
A 		94.8
(-3)
A 		141.2
(-0.8)
A 		219.5
(3)
A 		129.9
(-1.3)
A 		125
B 113.1
(-1.7)
A 		115.4
(-1.6)
A 		93.3
(-3)
A 		141
(0)
A 		187.7
(3)
P 		101.6
(-2.5)
A 		94
C 47
(-3)
A 		118.4
(0.4)
A 		101
(-0.5)
A 		116.6
(0.3)
A 		174.8
(3)
A 		148.6
(1.8)
P 		128
avr 87.2
(-3) 		110.2
(-1.7) 		96.4
(-2.5) 		132.9
(-0.4) 		194
(3) 		126.7
(-0.8) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 68.4
(3)
A 		35.7
(-0.5)
A 		21.8
(-2)
A 		12.5
(-3)
A 		56
B 72.5
(3)
P 		46.2
(0.7)
A 		27
(-1)
A 		3.8
(-3)
A 		69
C 63.3
(3)
M 		28.3
(-0.5)
A 		41.7
(0.9)
A 		3
(-3)
A 		60
avr 68.1
(3) 		36.7
(-0.1) 		30.2
(-0.7) 		6.4
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 18.7
(-3)
A 		34.5
(-1)
A 		20.7
(-2.7)
A 		35.8
(-0.8)
A 		66.2
(3)
A 		31.6
(-1.4)
A 		48
B 39.4
(-1.1)
A 		38.4
(-1.2)
A 		22.7
(-3)
A 		37.3
(-1.4)
A 		76.3
(3)
P 		37.9
(-1.3)
A 		54
C 17.4
(-3)
A 		36.1
(-0.1)
A 		25.7
(-1.7)
A 		23.4
(-2.1)
A 		56.5
(3)
A 		49.7
(2)
P 		39
avr 25.2
(-2.7) 		36.3
(-1.2) 		23
(-3) 		32.2
(-1.7) 		66.3
(3) 		39.7
(-0.7) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180532_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17337
Sequence Type Exemplar sequence
Representative Public ID Y70D2A.2 NCBI
Target Description Y70D2A.2 /REP_DB=WormBase Gene ID /WP=CE22833 /TR=Q9XW90 /GB=CAA22078.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078074 NCBI Caenorhabditis elegans Y70D2A.2 (Y70D2A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000026077 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14901579:14905184:-1 11/11 None
Y70D2A.2 ENSEMBL cdna:known chromosome:CEL140:X:14901870:14905178:-1 gene:Y70D2A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026074 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14902009-14905178(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y70D2A.2
Entrez Gene 181586 Entrez gene
SwissProt Q9XW90 EMBL-EBI
WormBase CE34134 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20065.1.S1_S_AT similar to CG7985-PA cfa
DROSOPHILA_2:1624568_AT dm
DROSGENOME1:151957_AT dm
CHICKEN:GGA.9401.1.S1_AT similar to hypothetical protein FLJ23825 gga
MU11KSUBA:AA692269_F_AT similar to hypothetical protein FLJ23825 mm
MG-U74BV2:113003_AT similar to hypothetical protein FLJ23825 mm
MOE430A:1434844_AT similar to hypothetical protein FLJ23825 mm
MOUSE430A_2:1434844_AT similar to hypothetical protein FLJ23825 mm
MOUSE430_2:1434844_AT similar to hypothetical protein FLJ23825 mm
MU19KSUBC:TC38019_S_AT Similar to hypothetical protein FLJ23825 (MGC78289), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4563 beta-N-acetylhexosaminidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22078 Hypothetical protein Y70D2A.2 [Caenorhabditis elegans] ref|NP_510475.2| Y70D2A.2 [Caenorhabditis elegans] 0.0
blast CAE63245 Hypothetical protein CBG07610 [Caenorhabditis briggsae] 0.0
blast CAE71393 Hypothetical protein CBG18300 [Caenorhabditis briggsae] 5.0E-93
blast CAE71393 Hypothetical protein CBG18300 [Caenorhabditis briggsae] 3.0E-92
Sequence
Target Sequence 
>C. ELEGANS:180532_S_AT
accacagtttacgacctttgactctatcatcatcactggttggcaaagatatgatcactt
tgcatcactctgtgaactttggccaacttcaatggtatcactggcattgaacctgattgt
tttaacaaagtttcatatagacaaggagtctgccgaacaagtaatacaggcattaaattg
tccacaaaccaccacacttgatcagcttgtggctgggtcggatcggtgccgatttcccgg
gtatcgagtacgggattcaataagagattatgtgcagttaaagacattttttgaaaactc
cacggaaaacggctggttgcaatcgtcacacatgagaatatcagctagtaacccatatta
catcgacgcaattgggaaggcctacgaaagaacgctgaaaaagttggatacggtttcgaa
tagtttaagcacttcgtttagtgaagtgttttacccggatgtgattgaagaattcaaaac
agattatttccagccgttctatgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACAGTTTACGACCTTTGACTCT 49 85 969 Antisense
GACTCTATCATCATCACTGGTTGGC 695 373 988 Antisense
ATATGATCACTTTGCATCACTCTGT 406 21 1017 Antisense
ATCACTCTGTGAACTTTGGCCAACT 172 29 1032 Antisense
ATGGTATCACTGGCATTGAACCTGA 681 49 1060 Antisense
AAACCACCACACTTGATCAGCTTGT 709 123 1154 Antisense
TGGGTCGGATCGGTGCCGATTTCCC 207 553 1182 Antisense
GCCGATTTCCCGGGTATCGAGTACG 385 265 1196 Antisense
AAACGGCTGGTTGCAATCGTCACAC 506 127 1275 Antisense
AGTGAAGTGTTTTACCCGGATGTGA 165 57 1408 Antisense
GATTATTTCCAGCCGTTCTATGAGG 567 429 1450 Antisense
Sequence Source Affymetrix Proprietary Database