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[180531_at] 7TM chemoreceptor, srg family

Description T09D3.2 /REP_DB=WormBase Gene ID /WP=CE13479 /TR=Q23034 /GB=AAG24195.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 17      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 4.4
(-3)
A 		34.3
(3)
A 		24.5
(1)
A 		32.3
(2.6)
A 		30
B 34.7
(2.1)
A 		26.6
(-3)
A 		36.2
(3)
A 		31
(-0.3)
A 		10
C 27.3
(-2.6)
M 		32.1
(-2.2)
A 		22.4
(-3)
A 		99.1
(3)
P 		77
avr 22.1
(-3) 		31
(-1.3) 		27.7
(-2) 		54.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 24.6
(-0.7)
A 		37.7
(0.8)
P 		57.1
(3)
M 		4.4
(-3)
A 		45.1
(1.6)
P 		15.9
(-1.7)
A 		53
B 22.1
(-3)
M 		53.7
(3)
P 		41.6
(0.7)
A 		25.6
(-2.3)
A 		34.9
(-0.6)
P 		23.1
(-2.8)
A 		32
C 32
(0.9)
A 		46.9
(3)
P 		38.9
(1.9)
A 		11.7
(-2)
A 		4.9
(-3)
A 		25.6
(-0)
A 		42
avr 26.2
(-0.7) 		46.1
(3) 		45.9
(3) 		13.9
(-3) 		28.3
(-0.3) 		21.5
(-1.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.6
(-3)
A 		7.4
(3)
A 		6.4
(2)
A 		4.7
(0.2)
A 		6
B 11.1
(3)
A 		6.6
(-3)
A 		8.4
(-0.6)
A 		6.6
(-3)
A 		5
C 9
(-2.2)
M 		9.2
(-2.1)
A 		7.8
(-3)
A 		16.7
(3)
P 		9
avr 7.2
(-3) 		7.7
(-1.6) 		7.5
(-2.1) 		9.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.5
(-1.4)
A 		13.4
(2.9)
P 		12.4
(2.4)
M 		1.1
(-3)
A 		13.6
(3)
P 		3.9
(-1.7)
A 		13
B 7.7
(-2.5)
M 		17.9
(3)
P 		10.1
(-1.2)
A 		6.8
(-3)
A 		14.2
(1)
P 		8.6
(-2)
A 		11
C 11.9
(1.9)
A 		14.3
(3)
P 		9.9
(0.9)
A 		2.4
(-2.6)
A 		1.6
(-3)
A 		8.6
(0.3)
A 		13
avr 8
(-0.7) 		15.2
(3) 		10.8
(0.8) 		3.4
(-3) 		9.8
(0.3) 		7
(-1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11935
Sequence Type Exemplar sequence
Representative Public ID T09D3.2 NCBI
Target Description T09D3.2 /REP_DB=WormBase Gene ID /WP=CE13479 /TR=Q23034 /GB=AAG24195.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072022
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T09D3.7 ENSEMBL cdna:known chromosome:CEL140:V:5339656:5341121:1 gene:T09D3.7 None
SNAP00000010225 ENSEMBL cdna:SNAP chromosome:CEL140:V:5339656:5341121:1 None
NM_072022 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-27) (srg-27) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182426 4/11 Cross Hyb Matching Probes None
SNAP00000010224 4/11 Cross Hyb Matching Probes None
GENEFINDER00000010238 4/11 Cross Hyb Matching Probes None
T09D3.6 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5334699-5341459(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-27
Ensembl T09D3.7
Entrez Gene 188323 Entrez gene
SwissProt Q86B33 EMBL-EBI
WormBase CE33313 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504423 Serpentine Receptor, class G (gamma) family member (srg-27) [Caenorhabditis elegans] gb|AAO25999.1| Serpentine receptor, class g (gamma) protein 27 [Caenorhabditis elegans] 0.0
blast CAE62631 Hypothetical protein CBG06761 [Caenorhabditis briggsae] 1.0E-139
blast NP_872226 Serpentine Receptor, class G (gamma) family member (srg-29) [Caenorhabditis elegans] gb|AAO25998.1| Serpentine receptor, class g (gamma) protein 29 [Caenorhabditis elegans] 3.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.5E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504423.2 7 30-52,65-87,109-131,152-174,199-221,241-263,278-300
T09D3.7 7 30-52,65-87,109-131,152-174,199-221,241-263,278-300
SNAP00000010225 7 30-52,65-87,109-131,152-174,199-221,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:180531_AT
tctcatgttcaccatctactcaagtatagtgacatctagcaagctaaggaaactaggtgg
acacatgaaaaaagttgagttctcaatgtctattgcaacaattttcacatcttgcggatt
tatattagttgttgcacttcaaatttgttatcttctgatagacagcgccagtttattaga
caaaatgtgggtgacaaagttgattatggctgcaactcaattgggtaatgatttctatat
gctaagtattgtgacttcttgcaaactgtcaaaacttggaagacatatgagaagagtcga
ggtttcactgactattgctacaatatttgtttcaattggttttgcactgatgttagttgt
acaagtgatgcaactatttgttccactggattccatggtacaaaatccatggatgggcac
atttttattgggtgctacacaatttgttaatgatttttacatgctaagtggacccgtggt
gttgctgattcttgataagaaaatcagaaaatcaattctacactgctcccttcgacattc
aaactccaagcatttttttggtactttaaaggcacgttctgctttcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCATGTTCACCATCTACTCAAGT 384 613 1518 Antisense
CAACAATTTTCACATCTTGCGGATT 85 191 1613 Antisense
GATAGACAGCGCCAGTTTATTAGAC 83 425 1674 Antisense
GATTATGGCTGCAACTCAATTGGGT 406 429 1719 Antisense
AGGTTTCACTGACTATTGCTACAAT 379 57 1817 Antisense
GATGCAACTATTTGTTCCACTGGAT 63 413 1884 Antisense
TTTACATGCTAAGTGGACCCGTGGT 220 673 1973 Antisense
CCGTGGTGTTGCTGATTCTTGATAA 404 263 1991 Antisense
AGAAAATCAATTCTACACTGCTCCC 279 73 2023 Antisense
TCCCTTCGACATTCAAACTCCAAGC 36 599 2044 Antisense
TTTAAAGGCACGTTCTGCTTTCGAA 465 671 2082 Antisense
Sequence Source Affymetrix Proprietary Database