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[180530_at]

Description R03E9.2 /REP_DB=WormBase Gene ID /WP=CE04785 /TR=Q21662 /GB=AAC48068.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 92.8
(-3)
A 		304
(3)
A 		255.2
(1.6)
A 		151.1
(-1.3)
A 		211
B 107.4
(-3)
A 		302.6
(3)
A 		280.8
(2.3)
A 		117.8
(-2.7)
A 		195
C 112.3
(-3)
A 		238.2
(3)
A 		223.9
(2.3)
P 		143.1
(-1.5)
A 		126
avr 104.2
(-3) 		281.6
(3) 		253.3
(2) 		137.3
(-1.9) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 202.8
(1.2)
A 		177.5
(-0.1)
A 		176.5
(-0.1)
A 		237.3
(3)
A 		196.4
(0.9)
A 		120.8
(-3)
A 		117
B 214.1
(-0.1)
A 		218.7
(0.1)
A 		280.8
(3)
A 		256.7
(1.9)
A 		152.3
(-3)
A 		155.3
(-2.9)
A 		129
C 144.1
(-2)
A 		264.8
(3)
A 		188.9
(-0.1)
A 		217.2
(1)
A 		119.4
(-3)
M 		149.8
(-1.7)
A 		145
avr 187
(-0.2) 		220.3
(1.9) 		215.4
(1.6) 		237.1
(3) 		156
(-2.1) 		142
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 33.8
(-1.4)
A 		66
(2.9)
A 		66.7
(3)
A 		22.1
(-3)
A 		45
B 34.2
(-1.9)
A 		74.7
(3)
A 		65.1
(1.8)
A 		25.1
(-3)
A 		50
C 37.2
(-1.5)
A 		68.5
(1.9)
A 		78
(3)
P 		24.1
(-3)
A 		54
avr 35.1
(-1.5) 		69.7
(3) 		69.9
(3) 		23.8
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 37.4
(-1.6)
A 		63.1
(3)
A 		38.4
(-1.4)
A 		60.2
(2.5)
A 		59.3
(2.3)
A 		29.4
(-3)
A 		34
B 74.5
(3)
A 		72.8
(2.4)
A 		68.2
(0.7)
A 		68
(0.7)
A 		61.9
(-1.6)
A 		57.9
(-3)
A 		17
C 53.4
(-0.9)
A 		80.8
(3)
A 		48.1
(-1.6)
A 		43.7
(-2.3)
A 		38.6
(-3)
M 		50.2
(-1.4)
A 		42
avr 55.1
(-0.9) 		72.2
(3) 		51.6
(-1.7) 		57.3
(-0.4) 		53.3
(-1.3) 		45.8
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16155
Sequence Type Exemplar sequence
Representative Public ID R03E9.2 NCBI
Target Description R03E9.2 /REP_DB=WormBase Gene ID /WP=CE04785 /TR=Q21662 /GB=AAC48068.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076734 NCBI Caenorhabditis elegans R03E9.2 (R03E9.2) mRNA, complete cds. 11/11 None
SNAP00000044140 ENSEMBL cdna:SNAP chromosome:CEL140:X:6730149:6733002:-1 11/11 None
GENEFINDER00000044147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6730149:6735260:-1 11/11 None
R03E9.2 ENSEMBL cdna:known chromosome:CEL140:X:6730149:6733002:-1 gene:R03E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6730148-6733002(-) 97.16 100.0
Public Domain and Genome References
Gene Title
Ensembl R03E9.2
Entrez Gene 187540 Entrez gene
SwissProt Q21662 EMBL-EBI
WormBase CE04785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509135 R03E9.2 [Caenorhabditis elegans] gb|AAC48068.1| Hypothetical protein R03E9.2 [Caenorhabditis elegans] 0.0
blast CAE65783 Hypothetical protein CBG10878 [Caenorhabditis briggsae] 1.0E-120
blast CAE65783 Hypothetical protein CBG10878 [Caenorhabditis briggsae] 1.0E-115
blast CAE65783 Hypothetical protein CBG10878 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509135.1 1 2-24
R03E9.2 1 2-24
SNAP00000044140 1 2-24
GENEFINDER00000044147 2 34-56,189-211
Sequence
Target Sequence 
>C. ELEGANS:180530_AT
gaatcttcgtttgaactgttttgcctgattggggacatgtgtcgcattatgaacaaggtt
tatgagagagttgatgaatatgattccaaatggcagcaaagatatcttgactttgaagct
gctctgcccaaatattggaacaaggaactgcagcaatatggagatttggaaactggaaag
ttcaaaccaaactcatcctcgcatgcattaatcactttatcgctagttaatgaaacatct
gaggatctcacaagattcttacagaacattcaaacagataataacttcactcctttgggt
cttcaaatgtccgaagatgacggtgtttcagtatctgccaattacttgttacttcgatct
ctccaattctatgctcttcaatccagcccagctcaagaaatgtctcttcaaatgtattcc
attctgaaaaacaatttggctgctgcaattgctcgagcttatcgtccagagaaaattttc
tacgggaaattcgacagaaatatgcgacctctcggagcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTTCGTTTGAACTGTTTTGCC 155 327 1273 Antisense
TTGCCTGATTGGGGACATGTGTCGC 426 699 1293 Antisense
TGAAGCTGCTCTGCCCAAATATTGG 71 575 1386 Antisense
AAACTCATCCTCGCATGCATTAATC 374 127 1461 Antisense
TAATAACTTCACTCCTTTGGGTCTT 438 607 1551 Antisense
GATGACGGTGTTTCAGTATCTGCCA 90 413 1588 Antisense
AATTACTTGTTACTTCGATCTCTCC 483 175 1612 Antisense
CAATTCTATGCTCTTCAATCCAGCC 204 181 1636 Antisense
CCAGCCCAGCTCAAGAAATGTCTCT 338 273 1655 Antisense
ATTGCTCGAGCTTATCGTCCAGAGA 446 5 1720 Antisense
GAAATATGCGACCTCTCGGAGCAAA 495 363 1769 Antisense
Sequence Source Affymetrix Proprietary Database