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[180529_at]

Description C17B7.3 /REP_DB=WormBase Gene ID /WP=CE16851 /TR=O45158 /GB=AAC04397.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2.4
(-3)
A 		40.9
(1.2)
A 		17.5
(-1.4)
A 		57.6
(3)
A 		55
B 18.1
(-0.3)
A 		36.8
(3)
A 		16
(-0.7)
A 		2.9
(-3)
A 		34
C 11.4
(-0.1)
A 		17.9
(1.9)
A 		1.9
(-3)
A 		21.5
(3)
A 		20
avr 10.6
(-3) 		31.9
(3) 		11.8
(-2.7) 		27.3
(1.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 6.8
(-3)
A 		18
(-0.6)
A 		27.8
(1.5)
A 		8.4
(-2.7)
A 		34.9
(3)
A 		34.1
(2.8)
A 		28
B 23.2
(2.9)
A 		7.4
(-3)
A 		19.2
(1.4)
A 		16.1
(0.2)
A 		19.2
(1.4)
A 		23.6
(3)
A 		16
C 12.1
(-1.5)
A 		22.2
(0.1)
A 		2.3
(-3)
A 		40.6
(3)
A 		5.6
(-2.5)
A 		7.1
(-2.2)
A 		38
avr 14
(-3) 		15.9
(-1.5) 		16.4
(-1.1) 		21.7
(3) 		19.9
(1.6) 		21.6
(2.9) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		8.9
(3)
A 		4.6
(-0.2)
A 		8.4
(2.6)
A 		8
B 5.8
(0.7)
A 		9.1
(3)
A 		3.7
(-0.8)
A 		0.6
(-3)
A 		9
C 3.8
(1.2)
A 		5.1
(3)
A 		0.7
(-3)
A 		3.6
(1)
A 		4
avr 3.5
(-2.4) 		7.7
(3) 		3
(-3) 		4.2
(-1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-3)
A 		6.4
(0.4)
A 		6.1
(0.2)
A 		2.1
(-2.4)
A 		10.5
(3)
A 		8.3
(1.6)
A 		9
B 8.1
(2.3)
A 		2.5
(-3)
A 		4.7
(-0.9)
A 		4.3
(-1.3)
A 		7.8
(2)
A 		8.8
(3)
A 		6
C 4.5
(0.1)
A 		6.8
(1.9)
A 		0.6
(-3)
A 		8.2
(3)
A 		1.8
(-2.1)
A 		2.4
(-1.6)
A 		8
avr 4.6
(-1.3) 		5.2
(-0.1) 		3.8
(-3) 		4.9
(-0.7) 		6.7
(3) 		6.5
(2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15391
Sequence Type Exemplar sequence
Representative Public ID C17B7.3 NCBI
Target Description C17B7.3 /REP_DB=WormBase Gene ID /WP=CE16851 /TR=O45158 /GB=AAC04397.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071527 NCBI Caenorhabditis elegans C17B7.3 (C17B7.3) mRNA, complete cds. 11/11 A 
SNAP00000020310 ENSEMBL cdna:SNAP chromosome:CEL140:V:3342986:3343691:1 11/11 None
GENEFINDER00000020321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3342986:3343691:1 11/11 None
C17B7.3 ENSEMBL cdna:known chromosome:CEL140:V:3342630:3343691:1 gene:C17B7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3342629-3343691(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17B7.3
Entrez Gene 182705 Entrez gene
SwissProt O45158 EMBL-EBI
WormBase CE16851 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04397 Hypothetical protein C17B7.3 [Caenorhabditis elegans] ref|NP_503928.1| C17B7.3 [Caenorhabditis elegans] 1.0E-114
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 1.0E-107
blast NP_503869 C36C5.12 [Caenorhabditis elegans] gb|AAB65934.1| Hypothetical protein C36C5.12 [Caenorhabditis elegans] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-90
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503928.1 2 4-23,30-52
C17B7.3 2 4-23,30-52
Sequence
Target Sequence 
>C. ELEGANS:180529_AT
atgacaagttttctcctacttgccatcattggcactgttcttgtaggagtggctcatgga
gcacctgttgcgtcaaaagacaccaattgtactgaaggatcgcttgatgcaattttatgt
ctcctgaatctgcaaaaattcgccgaacgatctcacgagcttgatatgaatgacaaagac
gagttgaagggcttcaaggatacttgcgattctctgcgaagctgtctggccaatctcaaa
tgctcaccagtgccaaaggatcagaaagaagcagcgctcaggagtatagaaaagtattgc
gatgctgttgtgtacgtatacagtgattttgcacagtgcagggaaaaattgaacgcaaaa
aaatcaaagtgttttgatgactgggacccaattccaaatgttcataaagaaaacgacccg
aaaaaagttgagcaattgaaaaaggacacttgcaaaaattatttcggaaaggatgactgc
ttgaagaaagaggttattgaaatatgcagtcaacaggaatgggataagctccgcgagcac
ttcatcggtttttctggagcacttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAAGTTTTCTCCTACTTGCCA 248 45 100 Antisense
CCATCATTGGCACTGTTCTTGTAGG 417 271 122 Antisense
ACTGTTCTTGTAGGAGTGGCTCATG 695 97 133 Antisense
GCCGAACGATCTCACGAGCTTGATA 181 285 241 Antisense
GAACGATCTCACGAGCTTGATATGA 523 347 244 Antisense
GAAATATGCAGTCAACAGGAATGGG 391 361 598 Antisense
GGAATGGGATAAGCTCCGCGAGCAC 564 531 615 Antisense
GGATAAGCTCCGCGAGCACTTCATC 694 509 621 Antisense
TCCGCGAGCACTTCATCGGTTTTTC 588 595 629 Antisense
GCACTTCATCGGTTTTTCTGGAGCA 327 317 636 Antisense
CATCGGTTTTTCTGGAGCACTTGTG 449 211 642 Antisense
Sequence Source Affymetrix Proprietary Database