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[180528_at]

Description C08G5.2 /REP_DB=WormBase Gene ID /WP=CE19691 /TR=Q9TZL5 /GB=AAC67420.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 43
(0.1)
A 		78.9
(3)
A 		5.4
(-3)
A 		6.6
(-2.9)
A 		74
B 75.4
(3)
A 		30.8
(-3)
A 		51.2
(-0.3)
A 		44.4
(-1.2)
A 		45
C 59.7
(-1.4)
A 		81.5
(-0.1)
A 		32.4
(-3)
A 		133.3
(3)
A 		101
avr 59.4
(2.2) 		63.7
(3) 		29.7
(-3) 		61.4
(2.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 118.1
(3)
A 		20.9
(-3)
A 		36.5
(-2)
A 		59.9
(-0.6)
A 		44.4
(-1.5)
A 		66.9
(-0.2)
A 		97
B 64.6
(1.3)
A 		45.9
(-0.2)
A 		34.6
(-1.1)
A 		11.2
(-3)
A 		84.9
(3)
A 		36.2
(-1)
A 		74
C 46.2
(-2.3)
A 		48.4
(-2)
A 		45.2
(-2.5)
A 		41.8
(-3)
A 		80.6
(3)
A 		57.1
(-0.6)
A 		39
avr 76.3
(3) 		38.4
(-2.9) 		38.8
(-2.8) 		37.6
(-3) 		70
(2) 		53.4
(-0.6) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 15.6
(2.4)
A 		17.1
(3)
A 		1.4
(-2.9)
A 		1
(-3)
A 		16
B 24.1
(3)
A 		7.6
(-3)
A 		11.9
(-1.4)
A 		9.5
(-2.3)
A 		17
C 19.8
(1.2)
A 		23.4
(3)
A 		11.3
(-3)
A 		22.5
(2.6)
A 		12
avr 19.8
(3) 		16
(1) 		8.2
(-3) 		11
(-1.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 21.8
(3)
A 		7.4
(-3)
A 		8
(-2.8)
A 		15.2
(0.2)
A 		13.4
(-0.5)
A 		16.3
(0.7)
A 		14
B 22.5
(0.7)
A 		15.3
(-0.7)
A 		8.4
(-2)
A 		3
(-3)
A 		34.5
(3)
A 		13.5
(-1)
A 		32
C 17.1
(-0.1)
A 		14.8
(-0.8)
A 		11.5
(-1.9)
A 		8.4
(-3)
A 		26.1
(3)
A 		19.1
(0.6)
A 		18
avr 20.5
(1.4) 		12.5
(-1.6) 		9.3
(-2.8) 		8.9
(-3) 		24.7
(3) 		16.3
(-0.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4587
Sequence Type Exemplar sequence
Representative Public ID C08G5.2 NCBI
Target Description C08G5.2 /REP_DB=WormBase Gene ID /WP=CE19691 /TR=Q9TZL5 /GB=AAC67420.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061399 NCBI Caenorhabditis elegans C08G5.2 (C08G5.2) mRNA, complete cds. 11/11 None
C08G5.2 ENSEMBL cdna:known chromosome:CEL140:II:739604:740853:-1 gene:C08G5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029165 8/11 Cross Hyb Matching Probes None
GENEFINDER00000029175 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029177 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:739570-740853(-) 88.19 100.0
Public Domain and Genome References
Gene Title
Ensembl C08G5.2
Entrez Gene 182425 Entrez gene
SwissProt Q9TZL5 EMBL-EBI
WormBase CE34671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67420 Hypothetical protein C08G5.2 [Caenorhabditis elegans] ref|NP_493800.3| C08G5.2 [Caenorhabditis elegans] 1.0E-91
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 2.0E-42
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 8.0E-36
Sequence
Target Sequence 
>C. ELEGANS:180528_AT
gcgacccgccagcttgaaggaaggcgcccgccgatgaatgttgactggctgacaattcca
aacgataatcgtattattgatcttcctccttctagttaccatctcgggagatgtcttcac
actggatttgatcgatcacatcaatcagcaagaaattttaaagaccagtgtgtgttgaac
attccatttgttccacaagagttgttccaatccatcgcctctcttcccaatggtataatc
tttgcggagatcgacactgtcggagtttacgactgcctccgcttgattgacagcatgtgc
caaaaagataaaggcaaagagtgttgcttctacactgaggacaacgatttggtggctgga
ttgttcggagccttcaatcttcttgcaaatggaaaagagccagctgttgatggttatgaa
tacgcaagcgaagatgatgaagttgaagtggagtacaaaagatgtgacgagtttccatat
aaaatgtctttctggctcaatgacactaccaccatttccgctgaagctgagagaaatgat
gatactcgtttttccgtttcgatttcggttgccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACCCGCCAGCTTGAAGGAAGGC 457 287 394 Antisense
AATCGTATTATTGATCTTCCTCCTT 591 167 460 Antisense
TCCTTCTAGTTACCATCTCGGGAGA 487 591 480 Antisense
TCTCGGGAGATGTCTTCACACTGGA 671 611 495 Antisense
ACAAGAGTTGTTCCAATCCATCGCC 23 115 588 Antisense
CGCCTCTCTTCCCAATGGTATAATC 642 257 609 Antisense
GCCTCCGCTTGATTGACAGCATGTG 643 281 668 Antisense
ATTGTTCGGAGCCTTCAATCTTCTT 208 5 753 Antisense
TCTGGCTCAATGACACTACCACCAT 49 609 884 Antisense
TGATGATACTCGTTTTTCCGTTTCG 672 563 930 Antisense
TTCCGTTTCGATTTCGGTTGCCAGA 220 695 945 Antisense
Sequence Source Affymetrix Proprietary Database