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[180527_at]

Description C09H5.1 /REP_DB=WormBase Gene ID /WP=CE08043 /TR=O16333 /GB=AAB65384.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 24.6
(0.3)
A 		4.4
(-3)
A 		19
(-0.6)
P 		40.8
(3)
A 		36
B 2.8
(-3)
A 		3.1
(-2.9)
A 		32.7
(3)
A 		6.4
(-2.3)
A 		30
C 2.8
(-3)
A 		7.4
(-2.1)
A 		20.3
(0.3)
A 		34.9
(3)
A 		32
avr 10.1
(-1.6) 		5
(-3) 		24
(2.1) 		27.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.4
(-2.8)
A 		22.2
(3)
A 		15.2
(0.1)
A 		9.4
(-2.4)
A 		7.9
(-3)
A 		20.5
(2.3)
A 		14
B 23.6
(3)
A 		15.6
(-0.1)
A 		15.9
(0.1)
A 		11.1
(-1.8)
A 		13.2
(-1)
M 		7.9
(-3)
A 		16
C 0.7
(-3)
A 		19.3
(2.2)
A 		5.7
(-1.6)
A 		4.1
(-2)
A 		13.8
(0.7)
A 		22.1
(3)
P 		21
avr 10.9
(-1.5) 		19
(3) 		12.3
(-0.7) 		8.2
(-3) 		11.6
(-1.1) 		16.8
(1.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9
(3)
A 		1
(-3)
A 		5
(0)
P 		6
(0.8)
A 		8
B 0.9
(-2.9)
A 		0.8
(-3)
A 		7.6
(3)
A 		1.4
(-2.5)
A 		7
C 0.9
(-3)
A 		2.1
(-1.8)
A 		7.1
(3)
A 		5.9
(1.8)
A 		6
avr 3.6
(-0.4) 		1.3
(-3) 		6.6
(3) 		4.4
(0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-3)
A 		7.9
(3)
A 		3.3
(-1.3)
A 		2.4
(-2.2)
A 		2.4
(-2.2)
A 		5
(0.3)
A 		6
B 8.2
(3)
A 		5.2
(-0.4)
A 		3.9
(-1.9)
A 		2.9
(-3)
A 		5.4
(-0.2)
M 		3
(-2.9)
A 		5
C 0.3
(-3)
A 		5.9
(1.7)
A 		1.5
(-2)
A 		0.8
(-2.6)
A 		4.5
(0.5)
A 		7.4
(3)
P 		7
avr 3.3
(-1.2) 		6.3
(3) 		2.9
(-1.7) 		2
(-3) 		4.1
(-0.1) 		5.1
(1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11520
Sequence Type Exemplar sequence
Representative Public ID C09H5.1 NCBI
Target Description C09H5.1 /REP_DB=WormBase Gene ID /WP=CE08043 /TR=O16333 /GB=AAB65384.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072684 NCBI Caenorhabditis elegans C09H5.1 (C09H5.1) mRNA, complete cds. 11/11 None
C09H5.1 ENSEMBL cdna:known chromosome:CEL140:V:8084958:8085358:1 gene:C09H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8084958-8085359(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09H5.1
Entrez Gene 182475 Entrez gene
SwissProt O16333 EMBL-EBI
WormBase CE08043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65384 Hypothetical protein C09H5.1 [Caenorhabditis elegans] ref|NP_505085.1| C09H5.1 [Caenorhabditis elegans] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:180527_AT
gttgcagatgtgtcgtatttctaaggaagttatcagacaaattccagaaaggaatttatt
aggaaacttgctttacaaattttaccagttgaagcaacacaaagaattttcaatctgtgg
aaattcaaactttgatgaacatccgatctctaaattattatttttctttcagattaatat
catcatcacactacaaatacacattattacagagaacgcttgtcgtgctaattccataac
tacaattgatatcactaatttatttcattcagtttttacaataccatcattttgtactat
tcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCAGATGTGTCGTATTTCTAAG 235 439 15 Antisense
CTTGCTTTACAAATTTTACCAGTTG 679 215 81 Antisense
AAACTTTGATGAACATCCGATCTCT 611 127 141 Antisense
GAACATCCGATCTCTAAATTATTAT 439 349 151 Antisense
ATTAATATCATCATCACACTACAAA 209 13 187 Antisense
ATCATCACACTACAAATACACATTA 361 29 196 Antisense
ATACACATTATTACAGAGAACGCTT 82 23 211 Antisense
GAGAACGCTTGTCGTGCTAATTCCA 128 391 226 Antisense
GTCGTGCTAATTCCATAACTACAAT 142 473 236 Antisense
GATATCACTAATTTATTTCATTCAG 396 425 262 Antisense
AATACCATCATTTTGTACTATTCGA 33 173 294 Antisense
Sequence Source Affymetrix Proprietary Database