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[180525_at]

Description ZK816.1 /REP_DB=WormBase Gene ID /WP=CE05114 /TR=Q23611 /GB=AAA82326.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 54      6grp_total > 31      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 73.6
(3)
P 		31.9
(-0.8)
A 		7.8
(-3)
A 		46.8
(0.6)
A 		66
B 58.1
(2.5)
A 		42.9
(0.3)
A 		19.8
(-3)
A 		61.3
(3)
P 		42
C 38.3
(-0.1)
A 		45
(0.6)
A 		7.9
(-3)
A 		70.3
(3)
A 		62
avr 56.7
(2.6) 		39.9
(0.5) 		11.8
(-3) 		59.5
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 63.3
(0.7)
P 		63.6
(0.8)
P 		86.1
(3)
P 		60.6
(0.5)
P 		25.5
(-3)
P 		68.7
(1.3)
P 		61
B 67
(1.1)
P 		61
(0.5)
P 		86.1
(3)
P 		41.8
(-1.5)
A 		56.1
(-0)
P 		26.7
(-3)
A 		59
C 65.2
(0)
P 		117
(3)
P 		57.6
(-0.4)
A 		96.6
(1.8)
P 		26
(-2.2)
P 		12.2
(-3)
A 		105
avr 65.2
(0.9) 		80.5
(3) 		76.6
(2.5) 		66.3
(1.1) 		35.9
(-3) 		35.9
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.8
(3)
P 		6.9
(-1.8)
A 		2
(-3)
A 		6.9
(-1.8)
A 		25
B 18.5
(3)
A 		10.6
(-0.4)
A 		4.6
(-3)
A 		13.1
(0.7)
P 		14
C 12.7
(2.9)
A 		12.9
(3)
A 		2.7
(-3)
A 		11.8
(2.4)
A 		10
avr 19.3
(3) 		10.1
(-0.4) 		3.1
(-3) 		10.6
(-0.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.7
(-1.4)
P 		22.6
(3)
P 		18.8
(1.5)
P 		15.4
(0.1)
P 		7.7
(-3)
P 		16.7
(0.6)
P 		15
B 23.3
(3)
P 		20.3
(1.7)
P 		20.9
(1.9)
P 		11.1
(-2.5)
A 		22.8
(2.8)
P 		9.9
(-3)
A 		13
C 24.2
(0.8)
P 		35.7
(3)
P 		14.7
(-1)
A 		19.4
(-0.1)
P 		8.4
(-2.2)
P 		4.1
(-3)
A 		32
avr 19.7
(0.6) 		26.2
(3) 		18.1
(-0) 		15.3
(-1.1) 		13
(-2) 		10.2
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18596
Sequence Type Exemplar sequence
Representative Public ID ZK816.1 NCBI
Target Description ZK816.1 /REP_DB=WormBase Gene ID /WP=CE05114 /TR=Q23611 /GB=AAA82326.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076178 NCBI Caenorhabditis elegans ZK816.1 (ZK816.1) mRNA, complete cds. 11/11 None
SNAP00000023561 ENSEMBL cdna:SNAP chromosome:CEL140:X:3359065:3360336:1 11/11 None
GENEFINDER00000023569 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3359065:3360580:1 11/11 None
ZK816.1 ENSEMBL cdna:known chromosome:CEL140:X:3359065:3360336:1 gene:ZK816.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3359065-3360337(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK816.1
Entrez Gene 191429 Entrez gene
SwissProt Q23611 EMBL-EBI
WormBase CE05114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82326 Hypothetical protein ZK816.1 [Caenorhabditis elegans] ref|NP_508579.1| ZK816.1 [Caenorhabditis elegans] 1.0E-41
blast AAA82326 Hypothetical protein ZK816.1 [Caenorhabditis elegans] ref|NP_508579.1| ZK816.1 [Caenorhabditis elegans] 3.0E-41
blast CAE68414 Hypothetical protein CBG14193 [Caenorhabditis briggsae] 4.0E-38
blast CAE68414 Hypothetical protein CBG14193 [Caenorhabditis briggsae] 1.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508579.1 1 5-27
ZK816.1 1 5-27
SNAP00000023561 1 5-27
GENEFINDER00000023569 2 2-24,111-133
Sequence
Target Sequence 
>C. ELEGANS:180525_AT
gccggctatcatcttttttgtttttgcattaattgcgtggctccgagtactgcagctgaa
ttatagacggcgacgtgcgactgaagcagctgaccgagaagcaaaaaagaaggcgtcaca
actagaaagtctcattacaaaaaaagatgggaaagtgatttgccacatacctatacaggt
ggaagacattgaaactggggcaatgtttctctacaattcagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGCTATCATCTTTTTTGTTTTT 413 283 42 Antisense
GCATTAATTGCGTGGCTCCGAGTAC 648 303 67 Antisense
TGGCTCCGAGTACTGCAGCTGAATT 144 545 79 Antisense
GCAGCTGAATTATAGACGGCGACGT 165 315 93 Antisense
TAGACGGCGACGTGCGACTGAAGCA 9 651 105 Antisense
GAAGCAGCTGACCGAGAAGCAAAAA 196 341 124 Antisense
GAAGGCGTCACAACTAGAAAGTCTC 588 333 150 Antisense
GTGATTTGCCACATACCTATACAGG 503 483 196 Antisense
GGTGGAAGACATTGAAACTGGGGCA 221 499 219 Antisense
AACTGGGGCAATGTTTCTCTACAAT 254 143 234 Antisense
GCAATGTTTCTCTACAATTCAGATG 76 323 241 Antisense
Sequence Source Affymetrix Proprietary Database