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[180524_at]

Description T22B2.6 /REP_DB=WormBase Gene ID /WP=CE13938 /TR=O45192 /GB=AAC04444.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1307
1 2 3 4 range
A 13.7
(-3)
A 		1109.1
(2.3)
P 		1250
(3)
P 		17.8
(-3)
A 		1236
B 57.9
(-2.8)
A 		972.4
(1.4)
P 		1316.3
(3)
P 		9.3
(-3)
A 		1307
C 63.9
(-3)
A 		929.1
(2.2)
P 		1070.1
(3)
P 		59.3
(-3)
A 		1011
avr 45.2
(-2.9) 		1003.5
(1.9) 		1212.1
(3) 		28.8
(-3) 		1183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 98.4
(-3)
A 		357.9
(-0.3)
P 		339.7
(-0.5)
P 		497.3
(1.1)
P 		553
(1.7)
P 		678.7
(3)
P 		580
B 64.6
(-3)
A 		332.3
(0.1)
P 		282.1
(-0.4)
P 		539
(2.6)
P 		501.8
(2.1)
P 		574.9
(3)
P 		510
C 24.6
(-3)
A 		339
(0.1)
P 		307.4
(-0.2)
P 		530.1
(2)
P 		625.3
(3)
P 		622.8
(3)
P 		601
avr 62.5
(-3) 		343.1
(-0) 		309.7
(-0.4) 		522.1
(1.9) 		560
(2.3) 		625.5
(3) 		563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 5
(-3)
A 		240.8
(1.4)
P 		326.8
(3)
P 		2.6
(-3)
A 		324
B 18.5
(-2.7)
A 		240.2
(1.7)
P 		305
(3)
P 		2
(-3)
A 		303
C 21.1
(-2.8)
A 		267.1
(1.2)
P 		373
(3)
P 		10
(-3)
A 		363
avr 14.9
(-2.8) 		249.4
(1.4) 		334.9
(3) 		4.9
(-3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 18.1
(-3)
A 		127.3
(1.4)
P 		74
(-0.7)
P 		126.1
(1.4)
P 		166.9
(3)
P 		165.2
(2.9)
P 		149
B 22.5
(-3)
A 		110.6
(-0.2)
P 		68.5
(-1.6)
P 		142.8
(0.8)
P 		203.9
(2.7)
P 		214.4
(3)
P 		192
C 9.1
(-3)
A 		103.4
(-0.2)
P 		78.2
(-0.9)
P 		106.6
(-0.1)
P 		202.3
(2.8)
P 		208.5
(3)
P 		199
avr 16.6
(-3) 		113.8
(0.3) 		73.6
(-1.1) 		125.2
(0.6) 		191
(2.8) 		196
(3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18481
Sequence Type Exemplar sequence
Representative Public ID T22B2.6 NCBI
Target Description T22B2.6 /REP_DB=WormBase Gene ID /WP=CE13938 /TR=O45192 /GB=AAC04444.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076276 NCBI Caenorhabditis elegans T22B2.6 (T22B2.6) mRNA, complete cds. 11/11 None
SNAP00000014683 ENSEMBL cdna:SNAP chromosome:CEL140:X:3914807:3915806:-1 10/11 None
GENEFINDER00000014690 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3914807:3915806:-1 10/11 None
T22B2.6 ENSEMBL cdna:known chromosome:CEL140:X:3914807:3915307:-1 gene:T22B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3914807-3915308(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B2.6
Entrez Gene 188720 Entrez gene
SwissProt O45192 EMBL-EBI
WormBase CE13938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68501 Hypothetical protein CBG14311 [Caenorhabditis briggsae] 4.0E-53
blast CAE68501 Hypothetical protein CBG14311 [Caenorhabditis briggsae] 3.0E-51
blast AAC04444 Hypothetical protein T22B2.6 [Caenorhabditis elegans] ref|NP_508677.1| T22B2.6 [Caenorhabditis elegans] 7.0E-47
blast AAC04444 Hypothetical protein T22B2.6 [Caenorhabditis elegans] ref|NP_508677.1| T22B2.6 [Caenorhabditis elegans] 2.0E-45
blast AAC04444 Hypothetical protein T22B2.6 [Caenorhabditis elegans] ref|NP_508677.1| T22B2.6 [Caenorhabditis elegans] 5.0E-44
blast CAE68501 Hypothetical protein CBG14311 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:180524_AT
catcatgccttgttgctcattatccatcagctacagttgctccagttgctccgcacctgt
ggtagctccggccccggtggcagtcagtggatatcaaccatacggaattgcttactaccc
agtcgttccatcatgcactgctcaatgtatgccaacatgtgctccaacctgcgttgacac
ccctgcttcttctccagttccacagagagatgacctgccaactccaccaccagaaactgt
gccaacgcctgtaccagaagttccaactactactactccgactgatgttgtaccctgcaa
atgcttgatcaaaataacaataactcaaggagataaggtgatatcaaaatgtggaccgaa
ttcatgcatgtgcccaccaagttacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCATGCCTTGTTGCTCATTATCC 545 213 33 Antisense
ATCCATCAGCTACAGTTGCTCCAGT 529 39 54 Antisense
ATACGGAATTGCTTACTACCCAGTC 680 21 132 Antisense
GTTCCATCATGCACTGCTCAATGTA 496 441 157 Antisense
ATGTATGCCAACATGTGCTCCAACC 556 47 177 Antisense
ACAGAGAGATGACCTGCCAACTCCA 208 109 234 Antisense
TGCCAACGCCTGTACCAGAAGTTCC 499 587 272 Antisense
AACTACTACTACTCCGACTGATGTT 25 141 297 Antisense
GACTGATGTTGTACCCTGCAAATGC 312 375 312 Antisense
GTGGACCGAATTCATGCATGTGCCC 613 489 383 Antisense
ATGCATGTGCCCACCAAGTTACAGT 253 43 396 Antisense
Sequence Source Affymetrix Proprietary Database