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[180523_at]

Description F47B10.5 /REP_DB=WormBase Gene ID /WP=CE03355 /TR=Q20505 /GB=CAA91985.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      6grp_total > 85      4grp_total > 25      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 874
1 2 3 4 range
A 44.4
(-3)
A 		351.4
(-0.8)
P 		377.3
(-0.6)
P 		877.8
(3)
P 		833
B 5.2
(-3)
A 		350.5
(-0.1)
P 		495.8
(1.2)
P 		710.1
(3)
P 		705
C 3.6
(-3)
A 		464.1
(0.2)
P 		445.5
(0)
P 		874
(3)
P 		870
avr 17.7
(-3) 		388.7
(-0.2) 		439.5
(0.2) 		820.6
(3) 		803

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 773
1 2 3 4 5 6 range
A 125.5
(-3)
P 		292.7
(-1.2)
P 		403.6
(0)
P 		680.1
(3)
P 		658.1
(2.8)
P 		625.1
(2.4)
P 		555
B 83.3
(-3)
M 		346.7
(-1)
P 		200.5
(-2.1)
P 		636.3
(1.3)
P 		691.1
(1.7)
P 		856
(3)
P 		773
C 100.9
(-3)
P 		356.8
(-0.9)
P 		306.4
(-1.3)
P 		720.6
(2.1)
P 		639.8
(1.4)
P 		829.8
(3)
P 		729
avr 103.2
(-3) 		332.1
(-0.9) 		303.5
(-1.2) 		679
(2.2) 		663
(2) 		770.3
(3) 		667
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 16.2
(-3)
A 		76.3
(0.2)
P 		98.6
(1.4)
P 		128.5
(3)
P 		112
B 1.6
(-3)
A 		86.6
(0.4)
P 		114.9
(1.5)
P 		151.3
(3)
P 		150
C 1.2
(-3)
A 		133.4
(2.1)
P 		155.3
(3)
P 		147.4
(2.7)
P 		154
avr 6.3
(-3) 		98.8
(1.1) 		122.9
(2.1) 		142.4
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 23.1
(-3)
P 		104.1
(-0.2)
P 		87.9
(-0.8)
P 		172.5
(2.1)
P 		198.6
(3)
P 		152.2
(1.4)
P 		176
B 29
(-3)
M 		115.4
(-1.2)
P 		48.7
(-2.6)
P 		168.5
(-0.1)
P 		280.8
(2.2)
P 		319.2
(3)
P 		290
C 37.4
(-3)
P 		108.9
(-1.2)
P 		78
(-2)
P 		144.9
(-0.3)
P 		207
(1.2)
P 		277.8
(3)
P 		240
avr 29.8
(-3) 		109.5
(-0.8) 		71.5
(-1.9) 		162
(0.6) 		228.8
(2.4) 		249.7
(3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16139
Sequence Type Exemplar sequence
Representative Public ID F47B10.5 NCBI
Target Description F47B10.5 /REP_DB=WormBase Gene ID /WP=CE03355 /TR=Q20505 /GB=CAA91985.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077416(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077416 NCBI Caenorhabditis elegans F47B10.5 (F47B10.5) mRNA, complete cds. 10/11 None
SNAP00000040443 ENSEMBL cdna:SNAP chromosome:CEL140:X:10889080:10890395:-1 10/11 None
GENEFINDER00000040452 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10889080:10890395:-1 10/11 None
F47B10.5 ENSEMBL cdna:known chromosome:CEL140:X:10889069:10890395:-1 gene:F47B10.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10889066-10890395(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.5
Entrez Gene 185904 Entrez gene
SwissProt Q20505 EMBL-EBI
WormBase CE37376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91985 Hypothetical protein F47B10.5 [Caenorhabditis elegans] ref|NP_509817.2| F47B10.5 [Caenorhabditis elegans] 2.0E-69
blast CAE70802 Hypothetical protein CBG17563 [Caenorhabditis briggsae] 3.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509817.2 1 52-74
F47B10.5 1 52-74
SNAP00000040443 1 52-74
GENEFINDER00000040452 1 52-74
Sequence
Target Sequence 
>C. ELEGANS:180523_AT
gggtaacgctatgtacacggatcaggtagtgtgccatgacactatggaaacttgtcgttc
tcactgcgataaatctgaatgtgtattcatggacaattgcaacaatatgggtaaaaagtt
cgtctgtatcccattcgatccaaaatttatgatgtggttaatgatcatttcattttttat
tgttctgctcacttgttcttcccttgtagcatgctacatttgtcgggcagtcagaagatc
atatcagatgcaggttcagttgtatttcaaaatccgggaagggttcatcatgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTAACGCTATGTACACGGATCAG 652 493 15 Antisense
CACGGATCAGGTAGTGTGCCATGAC 444 199 30 Antisense
TGGAAACTTGTCGTTCTCACTGCGA 610 547 59 Antisense
AAAAAGTTCGTCTGTATCCCATTCG 35 3 127 Antisense
GTCTGTATCCCATTCGATCCAAAAT 521 471 136 Antisense
TTTATTGTTCTGCTCACTTGTTCTT 195 675 190 Antisense
GTTCTTCCCTTGTAGCATGCTACAT 592 443 209 Antisense
GCATGCTACATTTGTCGGGCAGTCA 363 309 223 Antisense
GTCGGGCAGTCAGAAGATCATATCA 137 473 236 Antisense
GATGCAGGTTCAGTTGTATTTCAAA 132 413 261 Antisense
AATCCGGGAAGGGTTCATCATGTTC 542 167 285 Antisense
Sequence Source Affymetrix Proprietary Database