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[180522_at]

Description R11G1.2 /REP_DB=WormBase Gene ID /WP=CE04833 /TR=Q21947 /GB=AAA82320.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 38.6
(-2.6)
A 		27.5
(-3)
A 		87.2
(-0.6)
A 		175.8
(3)
A 		148
B 9.7
(-3)
A 		13.8
(-2.8)
A 		24.9
(-2.2)
A 		120.3
(3)
A 		111
C 58.7
(-3)
A 		120
(0.2)
A 		64.2
(-2.7)
A 		173.4
(3)
A 		115
avr 35.7
(-3) 		53.8
(-2.1) 		58.8
(-1.9) 		156.5
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 48
(-3)
A 		92.5
(-1.1)
A 		167.8
(2.1)
A 		144
(1.1)
M 		167.1
(2.1)
A 		189.1
(3)
A 		141
B 156.9
(-0.8)
A 		161.8
(-0.5)
A 		149.7
(-1.2)
A 		157.2
(-0.8)
A 		119.4
(-3)
P 		221.7
(3)
P 		102
C 121.6
(-1.9)
A 		167.7
(0.2)
A 		135.2
(-1.3)
A 		130.3
(-1.5)
A 		98.5
(-3)
P 		228.1
(3)
A 		130
avr 108.8
(-3) 		140.7
(-1.2) 		150.9
(-0.6) 		143.8
(-1) 		128.3
(-1.9) 		213
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 14.1
(-0.5)
A 		6
(-3)
A 		22.8
(2.1)
A 		25.7
(3)
A 		20
B 3.1
(-3)
A 		3.4
(-2.9)
A 		5.8
(-2.3)
A 		25.6
(3)
A 		23
C 19.4
(-3)
A 		34.5
(3)
A 		22.4
(-1.8)
A 		29.2
(0.9)
A 		15
avr 12.2
(-3) 		14.6
(-2) 		17
(-1) 		26.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 8.8
(-3)
A 		32.9
(0.5)
A 		36.5
(1)
A 		36.5
(1)
M 		50.4
(3)
A 		46
(2.4)
A 		42
B 54.6
(-0.6)
A 		53.8
(-0.7)
A 		36.4
(-3)
A 		41.6
(-2.3)
A 		48.5
(-1.4)
P 		82.7
(3)
P 		46
C 45.1
(-0.7)
A 		51.2
(-0)
A 		34.4
(-2)
A 		26.2
(-3)
A 		31.9
(-2.3)
P 		76.4
(3)
A 		50
avr 36.2
(-2.8) 		46
(-1) 		35.8
(-2.8) 		34.8
(-3) 		43.6
(-1.4) 		68.4
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18461
Sequence Type Exemplar sequence
Representative Public ID R11G1.2 NCBI
Target Description R11G1.2 /REP_DB=WormBase Gene ID /WP=CE04833 /TR=Q21947 /GB=AAA82320.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076227 NCBI Caenorhabditis elegans R11G1.2 (R11G1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000030143 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3654913:3657191:1 10/11 None
R11G1.2 ENSEMBL cdna:known chromosome:CEL140:X:3652004:3657191:1 gene:R11G1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030135 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030144 1/11 Cross Hyb Matching Probes None
SNAP00000030136 5/11 Cross Hyb Matching Probes None
SNAP00000030137 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3652004-3657192(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11G1.2
Entrez Gene 187816 Entrez gene
SwissProt Q21947 EMBL-EBI
WormBase CE04833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82320 Hypothetical protein R11G1.2 [Caenorhabditis elegans] ref|NP_508628.1| R11G1.2 [Caenorhabditis elegans] 1.0E-152
blast AAA82320 Hypothetical protein R11G1.2 [Caenorhabditis elegans] ref|NP_508628.1| R11G1.2 [Caenorhabditis elegans] 1.0E-91
blast CAE68461 Hypothetical protein CBG14251 [Caenorhabditis briggsae] 1.0E-43
blast CAE68460 Hypothetical protein CBG14250 [Caenorhabditis briggsae] 6.0E-37
blast CAE68461 Hypothetical protein CBG14251 [Caenorhabditis briggsae] 3.0E-35
Sequence
Target Sequence 
>C. ELEGANS:180522_AT
gttgttcttctgatggactcggatgaatactgtggattgtcaattgaaaatgtttacact
cggtacataactagcgaaacaattgatcagtcagacacttttggatacaatgtgccgaaa
ccaattggatataaaggagatgagccgatttggcccagaagttacgggtattcggctgaa
atgttcttcgatgagaatggagccgcattcccggtacatcctaggaaaaaactgggaagt
attattagacccctccaacaaggcgttcagaacatggtcagtccaaaatcgatacagcaa
aaagaggagacgacggaacatgtggaggcgattaaggagaaacgcaagaaaaagggatct
cgtggtgaaaccgttgcggataggctcattgcttcagcaaagcgaatggagcaattaaga
atttctgaagcagcaaagaacactgacgctaaaaaaaatgttgatgatcctgtgaagccc
gtggaaaaagttacactcaatactaaaaaatgtgttaaacttgctacacatgaaattgac
gacctctcagcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTCTTCTGATGGACTCGGATG 70 439 277 Antisense
GGAGATGAGCCGATTTGGCCCAGAA 693 515 412 Antisense
GGGTATTCGGCTGAAATGTTCTTCG 400 497 442 Antisense
TGAGAATGGAGCCGCATTCCCGGTA 598 567 468 Antisense
CGCATTCCCGGTACATCCTAGGAAA 136 255 480 Antisense
GTATTATTAGACCCCTCCAACAAGG 656 451 515 Antisense
TGGTCAGTCCAAAATCGATACAGCA 610 551 551 Antisense
GGGATCTCGTGGTGAAACCGTTGCG 388 495 630 Antisense
GTTGCGGATAGGCTCATTGCTTCAG 162 439 649 Antisense
ATGTTGATGATCCTGTGAAGCCCGT 403 47 734 Antisense
TGAAATTGACGACCTCTCAGCACTT 622 571 807 Antisense
Sequence Source Affymetrix Proprietary Database