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[180518_at]

Description R03H4.7 /REP_DB=WormBase Gene ID /WP=CE07410 /TR=Q21690 /GB=AAC48104.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 13      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 112.2
(-1.1)
P 		53.2
(-2.4)
P 		28
(-3)
A 		297.3
(3)
P 		269
B 106.6
(-0.1)
P 		50.8
(-2.7)
P 		45
(-3)
A 		170.6
(3)
P 		126
C 127.4
(-0.1)
P 		57.4
(-2.1)
P 		25.5
(-3)
A 		232.8
(3)
P 		207
avr 115.4
(-0.5) 		53.8
(-2.4) 		32.8
(-3) 		233.6
(3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 76.7
(-2.4)
P 		108.7
(-1.4)
P 		122.2
(-1)
P 		89.3
(-2)
P 		56.7
(-3)
P 		252.2
(3)
P 		196
B 103
(-2.8)
P 		122.2
(-2.3)
P 		131.9
(-2)
P 		155.3
(-1.3)
P 		97.4
(-3)
P 		305.6
(3)
P 		208
C 109.2
(-2)
P 		97.2
(-2.4)
P 		97.4
(-2.4)
P 		106.5
(-2.1)
P 		73.1
(-3)
P 		297.5
(3)
P 		224
avr 96.3
(-2.4) 		109.4
(-2) 		117.2
(-1.8) 		117
(-1.8) 		75.7
(-3) 		285.1
(3) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 40.9
(2.6)
P 		11.5
(-2.3)
P 		7.3
(-3)
A 		43.5
(3)
P 		36
B 34
(2.4)
P 		12.6
(-2.5)
P 		10.4
(-3)
A 		36.4
(3)
P 		26
C 42.2
(3)
P 		16.5
(-1.6)
P 		8.9
(-3)
A 		39.3
(2.5)
P 		33
avr 39
(2.9) 		13.5
(-2.1) 		8.9
(-3) 		39.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 14.1
(-3)
P 		38.7
(0.1)
P 		26.6
(-1.4)
P 		22.6
(-1.9)
P 		17.1
(-2.6)
P 		61.4
(3)
P 		47
B 35.8
(-2.7)
P 		40.7
(-2.4)
P 		32
(-3)
P 		41.1
(-2.3)
P 		39.6
(-2.4)
P 		113.9
(3)
P 		82
C 40.5
(-1.5)
P 		29.7
(-2.4)
P 		24.8
(-2.7)
P 		21.4
(-3)
P 		23.7
(-2.8)
P 		99.6
(3)
P 		78
avr 30.1
(-2.7) 		36.4
(-2.1) 		27.8
(-2.9) 		28.4
(-2.9) 		26.8
(-3) 		91.6
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180518_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11920
Sequence Type Exemplar sequence
Representative Public ID R03H4.7 NCBI
Target Description R03H4.7 /REP_DB=WormBase Gene ID /WP=CE07410 /TR=Q21690 /GB=AAC48104.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028896 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-20) (srsx-20) mRNA, complete cds. 11/11 None
R03H4.7 ENSEMBL cdna:known chromosome:CEL140:V:9028100:9029118:-1 gene:R03H4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9028100-9029119(-) 100.0 100.0
Public Domain and Genome References
Ensembl R03H4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024067 Serpentine Receptor, class SX family member (srsx-20) [Caenorhabditis elegans] gb|AAC48104.1| Hypothetical protein R03H4.7a [Caenorhabditis elegans] 1.0E-150
blast CAE72077 Hypothetical protein CBG19163 [Caenorhabditis briggsae] 1.0E-118
blast CAB03389 Hypothetical protein T22G5.4 [Caenorhabditis elegans] ref|NP_506442.1| Serpentine Receptor, class SX family member (srsx-19) [Caenorhabditis elegans] 5.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024067.1 5 15-37,50-72,92-114,148-170,180-202
R03H4.7 5 15-37,50-72,92-114,148-170,180-202
Sequence
Target Sequence 
>C. ELEGANS:180518_AT
gtttatccctgacgaggaagctccgtattgcatttttatgttaacaacagacgtgcggat
ttatcaaatggtttcgagtgcaatgatcgttttgaatacaattacactaatcgtgattat
attttctgttgtttgtgctgtgaaaaaatcggaaaacatgcgaggaagtcgtcattcaag
tggaactcgaagcaacagtttaagggaagaaaaaaataaagtttttcgatcaactttttt
cttggtactcatctacattttatcatggtggctggttgtcataattttccgcgttatggt
tgaattcatcgcaaatgttcacgaagcggttcactacatgccttatttgcttctaattgt
catgccaaatttttgtcaaacctactacgtaacatatttccgatctccgcgctttcgtaa
agctttccgagaacaattcaactggattacttgtgggatggcatttccaacaatatttga
aaaggaaagaagtagcagagggagcaaacatggaagtgccacaaactctgccaacggaca
tcacgctcatacagatccagacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTATCCCTGACGAGGAAGCTCCG 202 449 222 Antisense
GGAAGCTCCGTATTGCATTTTTATG 450 531 237 Antisense
TATATTTTCTGTTGTTTGTGCTGTG 540 661 339 Antisense
GATCAACTTTTTTCTTGGTACTCAT 165 421 449 Antisense
GGCTGGTTGTCATAATTTTCCGCGT 237 539 491 Antisense
GTTCACGAAGCGGTTCACTACATGC 675 443 538 Antisense
CACTACATGCCTTATTTGCTTCTAA 182 197 553 Antisense
TACGTAACATATTTCCGATCTCCGC 569 647 607 Antisense
ATCTCCGCGCTTTCGTAAAGCTTTC 541 29 624 Antisense
CATGGAAGTGCCACAAACTCTGCCA 355 209 730 Antisense
TCACGCTCATACAGATCCAGACGGA 205 627 762 Antisense
Sequence Source Affymetrix Proprietary Database