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[180517_at]

Description K09B11.9 /REP_DB=WormBase Gene ID /WP=CE21053 /TR=Q9XU77 /GB=CAB05553.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 84
(1.8)
M 		87.5
(3)
A 		70.5
(-3)
A 		86.8
(2.8)
A 		17
B 97.3
(-1.1)
M 		124
(3)
A 		89.6
(-2.2)
A 		84.5
(-3)
A 		40
C 147.3
(3)
P 		96
(-3)
A 		110.3
(-1.3)
P 		142.1
(2.4)
A 		51
avr 109.5
(3) 		102.5
(0.8) 		90.1
(-3) 		104.5
(1.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 74.2
(0.6)
A 		46.2
(-0.9)
A 		120.8
(3)
P 		59.9
(-0.2)
A 		45.3
(-1)
A 		6.4
(-3)
A 		114
B 131.9
(1.8)
P 		69.5
(-1.7)
A 		153.6
(3)
P 		76.6
(-1.3)
P 		47.1
(-3)
A 		96.9
(-0.2)
P 		107
C 59.7
(-1.5)
A 		57.7
(-1.6)
A 		99.4
(2.3)
A 		106.2
(3)
P 		43.6
(-3)
A 		69.8
(-0.5)
P 		63
avr 88.6
(0.3) 		57.8
(-2.1) 		124.6
(3) 		80.9
(-0.3) 		45.3
(-3) 		57.7
(-2.1) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 30.6
(3)
M 		19
(-0.9)
A 		18.4
(-1.1)
A 		12.7
(-3)
A 		18
B 31
(3)
M 		30.6
(2.8)
A 		20.8
(-1.7)
A 		18
(-3)
A 		13
C 48.8
(3)
P 		27.6
(-2.1)
A 		38.4
(0.5)
P 		24
(-3)
A 		25
avr 36.8
(3) 		25.7
(-0.6) 		25.9
(-0.5) 		18.2
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.7
(-0.1)
A 		16.4
(0.6)
A 		26.3
(3)
P 		15.2
(0.3)
A 		13.7
(-0.1)
A 		1.6
(-3)
A 		25
B 45.9
(3)
P 		23.1
(-2.1)
A 		37.3
(1.1)
P 		20.3
(-2.7)
P 		19.1
(-3)
A 		36.1
(0.8)
P 		27
C 22.1
(1.3)
A 		17.6
(-1.1)
A 		25.3
(3)
A 		21.4
(0.9)
P 		14.1
(-3)
A 		23.4
(2)
P 		11
avr 27.2
(2) 		19
(-1.5) 		29.6
(3) 		19
(-1.5) 		15.6
(-3) 		20.4
(-0.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10114
Sequence Type Exemplar sequence
Representative Public ID K09B11.9 NCBI
Target Description K09B11.9 /REP_DB=WormBase Gene ID /WP=CE21053 /TR=Q9XU77 /GB=CAB05553.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070192 NCBI Caenorhabditis elegans K09B11.9 (K09B11.9) mRNA, complete cds. 11/11 None
SNAP00000037697 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13446001:13453468:-1 11/11 None
GENEFINDER00000037710 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13446001:13453750:-1 11/11 None
K09B11.9 ENSEMBL cdna:known chromosome:CEL140:IV:13446001:13453468:-1 gene:K09B11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13446006-13453474(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09B11.9
Entrez Gene 178311 Entrez gene
SwissProt Q9XU77 EMBL-EBI
WormBase CE38393 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257971_AT vesicle tethering family protein at
CANINE:1605990_AT similar to General vesicular transport factor p115 (Transcytosis associated protein) (TAP) (Vesicle docking protein) cfa
CANINE:1597015_AT similar to General vesicular transport factor p115 (Transcytosis associated protein) (TAP) (Vesicle docking protein) cfa
CANINE_2:CFA.17017.1.S1_AT similar to General vesicular transport factor p115 (Transcytosis associated protein) (TAP) (Vesicle docking protein) cfa
CANINE_2:CFA.18635.1.S1_S_AT similar to General vesicular transport factor p115 (Transcytosis associated protein) (TAP) (Vesicle docking protein) cfa
CANINE_2:CFAAFFX.13431.1.S1_AT similar to General vesicular transport factor p115 (Transcytosis associated protein) (TAP) (Vesicle docking protein) cfa
CANINE_2:CFAAFFX.13431.1.S1_S_AT similar to General vesicular transport factor p115 (Transcytosis associated protein) (TAP) (Vesicle docking protein) cfa
DROSOPHILA_2:1622968_AT dm
DROSGENOME1:141459_AT dm
CHICKEN:GGAAFFX.20187.1.S1_S_AT similar to Vesicle docking protein p115 gga
CHICKEN:GGAAFFX.6875.1.S1_S_AT similar to Vesicle docking protein p115 gga
HG-FOCUS:201832_S_AT vesicle docking protein p115 hs
HG-U133A:201832_S_AT vesicle docking protein p115 hs
HG-U133_PLUS_2:201832_S_AT vesicle docking protein p115 hs
HG-U133A_2:201832_S_AT vesicle docking protein p115 hs
HG-U133A:201831_S_AT vesicle docking protein p115 hs
HG-U133A_2:201831_S_AT vesicle docking protein p115 hs
HG-U133_PLUS_2:201831_S_AT vesicle docking protein p115 hs
HU35KSUBB:RC_Z40332_AT vesicle docking protein p115 hs
HU35KSUBD:RC_R81358_AT vesicle docking protein p115 hs
U133_X3P:G4505540_3P_A_AT vesicle docking protein p115 hs
U133_X3P:HS.325948.0.A1_3P_A_AT vesicle docking protein p115 hs
HG-U95AV2:37356_R_AT vesicle docking protein p115 hs
HG-U95B:45396_AT vesicle docking protein p115 hs
HG-U133A_2:222316_AT Vesicle docking protein p115 hs
HG-U133_PLUS_2:222316_AT Vesicle docking protein p115 hs
HG-U133A:222316_AT Vesicle docking protein p115 hs
HG-U95B:43634_AT Vesicle docking protein p115 hs
HU35KSUBD:RC_AA451679_AT Vesicle docking protein p115 hs
U133_X3P:HS.292689.0.A1_3P_AT Vesicle docking protein p115 hs
MU11KSUBB:MSA.18481.0_S_AT vesicle docking protein mm
MG-U74AV2:103018_AT vesicle docking protein mm
MOE430A:1424274_AT vesicle docking protein mm
MOUSE430A_2:1424274_AT vesicle docking protein mm
MOUSE430_2:1424274_AT vesicle docking protein mm
MG-U74BV2:115865_AT Vesicle docking protein (Vdp), mRNA mm
MU19KSUBA:TC22494_AT Vesicle docking protein (Vdp), mRNA mm
MU19KSUBC:TC36412_AT Vesicle docking protein (Vdp), mRNA mm
RG-U34A:U14192COMPLETE_SEQ_AT vesicle docking protein rn
RAE230A:1367730_AT vesicle docking protein rn
RAT230_2:1367730_AT vesicle docking protein rn
YEAST_2:1778216_AT Essential protein involved in intracellular protein transport, coiled-coil protein necessary for transport from ER to Golgi; required for assembly of the ER-to-Golgi SNARE complex Sc
Protein Similarities
Method ID Description E-Value
blast CAB05553 Hypothetical protein K09B11.9 [Caenorhabditis elegans] emb|CAI79173.1| Hypothetical protein K09B11.9 [Caenorhabditis elegans] ref|NP_502593.2| K09B11.9 [Caenorhabditis elegans] 0.0
blast CAE58598 Hypothetical protein CBG01765 [Caenorhabditis briggsae] 0.0
blast AAF46286 CG1422-PA [Drosophila melanogaster] ref|NP_572417.1| CG1422-PA [Drosophila melanogaster] gb|AAL13980.1| SD01505p [Drosophila melanogaster] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR006953 EMBL-EBI Uso1/p115 like vesicle tethering protein, head region 1.0E-126
Pfam IPR006953 EMBL-EBI Uso1/p115 like vesicle tethering protein, head region 1.0E-126
Pfam IPR006953 EMBL-EBI Uso1/p115 like vesicle tethering protein, head region 1.0E-126
Pfam IPR006953 EMBL-EBI Uso1/p115 like vesicle tethering protein, head region 1.5E-46
Pfam IPR006953 EMBL-EBI Uso1/p115 like vesicle tethering protein, head region 1.5E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037710 1 33-50
Sequence
Target Sequence 
>C. ELEGANS:180517_AT
gagactcacacaacaatggtatgcagaagccgaacgatacaagcaatgggctcaacaatg
gcaagcctatcagttggcacagcttccgaatggtgtagagacgggattggctcagcttca
gcaacaagtcaacgagttggagcagcaactcggatttggatatcaggcattcgaacagca
atcacaaacgatgctccactatacatcagagaatgcaaatcttaaagatagactcgcgaa
aacggaagctgctctcgctgaagccaattataaaattgagcaattgaatttgaagccaat
ttcgaatggaatagttgtggagcacgaaccacaggctgactccgaagagttttcaaaact
gaaacaagaacaagaagaacttctgatgcttctcgctgatcaacacaataaaatgtcagc
ctaccgacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTCACACAACAATGGTATGCA 690 393 2172 Antisense
ATGGCAAGCCTATCAGTTGGCACAG 432 49 2229 Antisense
GTTGGCACAGCTTCCGAATGGTGTA 97 437 2244 Antisense
GTAGAGACGGGATTGGCTCAGCTTC 361 457 2266 Antisense
GGCTCAGCTTCAGCAACAAGTCAAC 477 539 2280 Antisense
ATCAGGCATTCGAACAGCAATCACA 318 29 2333 Antisense
AACGATGCTCCACTATACATCAGAG 604 143 2358 Antisense
CGAAAACGGAAGCTGCTCTCGCTGA 323 249 2408 Antisense
GGAGCACGAACCACAGGCTGACTCC 374 519 2490 Antisense
TTCTGATGCTTCTCGCTGATCAACA 510 691 2552 Antisense
AATAAAATGTCAGCCTACCGACGCC 512 169 2578 Antisense
Sequence Source Affymetrix Proprietary Database