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[180515_at]

Description C52E2.1 /REP_DB=WormBase Gene ID /WP=CE25826 /TR=Q9N4K5 /GB=AAF35429.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 12.9
(-3)
A 		53.5
(2.2)
A 		39.9
(0.5)
P 		59.7
(3)
A 		47
B 31.2
(-1.3)
A 		71.5
(3)
A 		15.4
(-3)
A 		70.1
(2.9)
A 		56
C 53.5
(-3)
A 		53.5
(-3)
A 		54
(-2.8)
A 		67.5
(3)
A 		14
avr 32.5
(-3) 		59.5
(1.9) 		36.4
(-2.3) 		65.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 5.3
(-3)
A 		39.7
(-0.2)
A 		42.1
(-0)
A 		47.2
(0.4)
A 		30.8
(-0.9)
A 		79.9
(3)
A 		75
B 15.4
(-2.7)
A 		62.4
(0.5)
A 		53.8
(-0.1)
A 		10.9
(-3)
A 		25.1
(-2)
A 		100.3
(3)
P 		89
C 51.7
(-0.6)
A 		17.1
(-2.4)
A 		38.5
(-1.3)
A 		71.3
(0.5)
A 		6.7
(-3)
A 		118.4
(3)
P 		112
avr 24.1
(-2.8) 		39.7
(-1.6) 		44.8
(-1.2) 		43.1
(-1.3) 		20.9
(-3) 		99.5
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.7
(-3)
A 		11.6
(3)
A 		10.4
(2)
P 		8.7
(0.5)
A 		7
B 9.9
(-0.3)
A 		17.7
(3)
A 		3.6
(-3)
A 		14.9
(1.8)
A 		14
C 17.7
(2.1)
A 		15.4
(0.2)
A 		18.8
(3)
A 		11.4
(-3)
A 		7
avr 10.8
(-3) 		14.9
(3) 		10.9
(-2.9) 		11.7
(-1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1
(-3)
A 		14.1
(1.3)
A 		9.2
(-0.3)
A 		12
(0.6)
A 		9.3
(-0.3)
A 		19.4
(3)
A 		18
B 5.4
(-2.6)
A 		20.8
(0.1)
A 		13.1
(-1.2)
A 		2.9
(-3)
A 		10.2
(-1.7)
A 		37.4
(3)
P 		35
C 19.2
(-0.3)
A 		5.2
(-2.5)
A 		9.8
(-1.8)
A 		14.3
(-1.1)
A 		2.2
(-3)
A 		39.6
(3)
P 		37
avr 8.5
(-2.7) 		13.4
(-1.5) 		10.7
(-2.2) 		9.7
(-2.4) 		7.2
(-3) 		32.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5661
Sequence Type Exemplar sequence
Representative Public ID C52E2.1 NCBI
Target Description C52E2.1 /REP_DB=WormBase Gene ID /WP=CE25826 /TR=Q9N4K5 /GB=AAF35429.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061696 NCBI Caenorhabditis elegans C52E2.1 (C52E2.1) mRNA, complete cds. 11/11 None
SNAP00000007514 ENSEMBL cdna:SNAP chromosome:CEL140:II:1854396:1855329:1 11/11 None
C52E2.1 ENSEMBL cdna:known chromosome:CEL140:II:1854396:1855329:1 gene:C52E2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1854394-1855328(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E2.1
Entrez Gene 183723 Entrez gene
SwissProt Q9N4K5 EMBL-EBI
WormBase CE25826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 1.0E-164
blast AAB93652 Hypothetical protein C16C4.6 [Caenorhabditis elegans] ref|NP_494100.1| C16C4.6 [Caenorhabditis elegans] 1.0E-77
blast AAK67221 Hypothetical protein C52E2.7 [Caenorhabditis elegans] ref|NP_494094.1| C52E2.7 [Caenorhabditis elegans] 2.0E-76
Sequence
Target Sequence 
>C. ELEGANS:180515_AT
gaattttctcgttgccttgaatcttctggaagtgaaacagttacgcgtttctaaagaaga
cgcaacctgtggcaaactgacaggaatcaaatttaaacacgttacaatggtagagagaaa
ccgtccgatctttgatcgtttttatcgtgactccgatagtctcaccctttacgaccgagc
tcttctcggtgagcaaactagagccatcttctccgaaaacgtgaacagccttgtgttaat
tccttcgtttgtcgtggatttcaacgatctgttggcgattaatgctactaaagtggacat
cggtcggtcattcacattatccaacttgaatctgtttctcagacattttatcaatggatc
aaatccaaggctgaaggaaattcatgtttcattaaaaggaaacaacctcgaggactttaa
gaccactctgctaaacagtatcaaatattggacgtcttccatatccaaaacttacgaaga
tggtcgatcaattgacgggttaggatttctacggatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTTCTCGTTGCCTTGAATCTT 683 323 318 Antisense
GAAGACGCAACCTGTGGCAAACTGA 161 337 373 Antisense
AGAGAGAAACCGTCCGATCTTTGAT 563 67 429 Antisense
TATCGTGACTCCGATAGTCTCACCC 690 655 460 Antisense
ACGACCGAGCTCTTCTCGGTGAGCA 235 93 488 Antisense
GAGCAAACTAGAGCCATCTTCTCCG 252 391 508 Antisense
ACAGCCTTGTGTTAATTCCTTCGTT 361 109 542 Antisense
ATTCCTTCGTTTGTCGTGGATTTCA 692 7 556 Antisense
ACATCGGTCGGTCATTCACATTATC 76 105 614 Antisense
GAGGACTTTAAGACCACTCTGCTAA 311 405 727 Antisense
GACGGGTTAGGATTTCTACGGATCG 508 377 811 Antisense
Sequence Source Affymetrix Proprietary Database