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[180514_at]

Description K10H10.4 /REP_DB=WormBase Gene ID /WP=CE16254 /TR=O45681 /GB=CAB05780.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1174
1 2 3 4 range
A 68.6
(-3)
A 		980.7
(3)
P 		768.7
(1.6)
P 		114
(-2.7)
A 		912
B 98.3
(-2.8)
A 		970.9
(3)
P 		915.5
(2.6)
P 		73.4
(-3)
A 		898
C 57.9
(-3)
A 		1232.3
(3)
P 		811.2
(0.8)
P 		109.7
(-2.7)
A 		1174
avr 74.9
(-3) 		1061.3
(3) 		831.8
(1.6) 		99
(-2.9) 		986

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 70.2
(-3)
A 		493.2
(2.5)
P 		234.3
(-0.9)
P 		306.8
(0.1)
P 		532.7
(3)
P 		276.4
(-0.3)
P 		463
B 103.8
(-3)
M 		484.1
(3)
P 		295.6
(0)
P 		353.9
(0.9)
P 		369.9
(1.2)
P 		269.4
(-0.4)
P 		380
C 148.9
(-3)
A 		443.5
(3)
P 		366.7
(1.4)
P 		298.6
(0)
P 		353.2
(1.2)
P 		291.2
(-0.1)
P 		295
avr 107.6
(-3) 		473.6
(3) 		298.9
(0.1) 		319.8
(0.5) 		418.6
(2.1) 		279
(-0.2) 		366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 25
(-2.7)
A 		212.9
(3)
P 		201
(2.6)
P 		16.7
(-3)
A 		196
B 31.4
(-2.6)
A 		239.8
(3)
P 		212.1
(2.3)
P 		15.6
(-3)
A 		224
C 19.2
(-3)
A 		354.3
(3)
P 		282.7
(1.7)
P 		18.5
(-3)
A 		336
avr 25.2
(-2.8) 		269
(3) 		231.9
(2.1) 		16.9
(-3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 12.9
(-3)
A 		175.4
(3)
P 		51
(-1.6)
P 		77.8
(-0.6)
P 		160.8
(2.5)
P 		67.3
(-1)
P 		163
B 36.1
(-3)
M 		161.1
(3)
P 		71.8
(-1.3)
P 		93.7
(-0.2)
P 		150.3
(2.5)
P 		100.4
(0.1)
P 		125
C 55.2
(-3)
A 		135.3
(3)
P 		93.3
(-0.1)
P 		60
(-2.6)
P 		114.3
(1.4)
P 		97.5
(0.2)
P 		80
avr 34.7
(-3) 		157.3
(3) 		72
(-1.2) 		77.2
(-0.9) 		141.8
(2.2) 		88.4
(-0.4) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2755
Sequence Type Exemplar sequence
Representative Public ID K10H10.4 NCBI
Target Description K10H10.4 /REP_DB=WormBase Gene ID /WP=CE16254 /TR=O45681 /GB=CAB05780.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064609 NCBI Caenorhabditis elegans K10H10.4 (K10H10.4) mRNA, complete cds. 11/11 None
SNAP00000031897 ENSEMBL cdna:SNAP chromosome:CEL140:II:14500383:14502434:1 11/11 None
GENEFINDER00000031901 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14500383:14501432:1 11/11 None
K10H10.4 ENSEMBL cdna:known chromosome:CEL140:II:14500425:14501535:1 gene:K10H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14500673-14501429(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10H10.4
Entrez Gene 175109 Entrez gene
SwissProt O45681 EMBL-EBI
WormBase CE16254 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05781 Hypothetical protein K10H10.5 [Caenorhabditis elegans] ref|NP_497011.1| K10H10.5 [Caenorhabditis elegans] 4.0E-44
blast CAB05780 Hypothetical protein K10H10.4 [Caenorhabditis elegans] ref|NP_497010.1| K10H10.4 [Caenorhabditis elegans] 2.0E-42
blast CAB05780 Hypothetical protein K10H10.4 [Caenorhabditis elegans] ref|NP_497010.1| K10H10.4 [Caenorhabditis elegans] 5.0E-42
blast CAE57924 Hypothetical protein CBG00977 [Caenorhabditis briggsae] 5.0E-26
blast CAE57924 Hypothetical protein CBG00977 [Caenorhabditis briggsae] 6.0E-26
blast CAE57924 Hypothetical protein CBG00977 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031897 1 7-26
GENEFINDER00000031901 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:180514_AT
cccaactctactcccaatgtaattgcccatcattctgtagtggatacatgcagcaacaac
cacagtactaccaaagcccctgtgggtactcatcaggatgttctggaggcagtggcggtg
gctattatcctagacggcgccaccataaacacaagaagccacgtagaaagttcagatttg
actccgacgaggacgaggatcttccaccaccaccaccaagaaagagtgcaaaaatttcga
gggttcacagtgaggagcaaggatttattgaggagaaaccaagagtcactgaaactacaa
aaactgatagttcctgggagaatgaggacctctgggaaaagaaatttgtcaccgaatcga
cgcataccaaagccgaagaaaaactggattcagaagagtttcctgaaatcacaagtgaag
aaattgaggcagcaatgcgaagaaagacaaccttacctccacgtgtagtacaacctcagc
cagttgctccagctggtggtggccttggaggacttggtctaggaaatggtggactctttg
gaattagcagtggtgttggagttggtgtaccaggagtcggaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAACTCTACTCCCAATGTAATTG 52 257 38 Antisense
TGTAATTGCCCATCATTCTGTAGTG 482 557 55 Antisense
CAAAGCCCCTGTGGGTACTCATCAG 154 193 109 Antisense
TTCTGGAGGCAGTGGCGGTGGCTAT 540 689 138 Antisense
GGTGGCTATTATCCTAGACGGCGCC 123 499 154 Antisense
AGTTCAGATTTGACTCCGACGAGGA 618 63 206 Antisense
CGACGAGGACGAGGATCTTCCACCA 63 251 222 Antisense
TTGTCACCGAATCGACGCATACCAA 415 705 383 Antisense
CTTACCTCCACGTGTAGTACAACCT 284 1 489 Antisense
TAGTACAACCTCAGCCAGTTGCTCC 400 653 503 Antisense
GTTGGTGTACCAGGAGTCGGACCGA 65 435 598 Antisense
Sequence Source Affymetrix Proprietary Database