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[180512_at]

Description F47H4.11 /REP_DB=WormBase Gene ID /WP=CE20828 /TR=Q9XU26 /GB=CAB07210.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-3)
A 		3.2
(-1.9)
A 		4.2
(-1.2)
A 		10.5
(3)
A 		9
B 3
(-1.4)
A 		5.9
(3)
A 		5.6
(2.6)
A 		1.9
(-3)
A 		4
C 2.5
(-3)
A 		5.4
(1.8)
A 		3.2
(-1.8)
A 		6.1
(3)
A 		4
avr 2.4
(-3) 		4.8
(0.8) 		4.3
(-0) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.2
(1.7)
A 		1.6
(-3)
A 		2.1
(-2.1)
A 		4.9
(3)
A 		4
(1.4)
A 		3.3
(0.1)
A 		3
B 4.3
(0.5)
A 		5.4
(1.8)
A 		6.5
(3)
A 		3.4
(-0.5)
A 		4.1
(0.3)
A 		1.2
(-3)
A 		5
C 2.3
(-2.4)
A 		12.5
(1.7)
A 		6.4
(-0.8)
A 		15.7
(3)
A 		5.9
(-1)
A 		0.9
(-3)
A 		15
avr 3.6
(-1.3) 		6.5
(1.5) 		5
(0.1) 		8
(3) 		4.7
(-0.2) 		1.8
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-3)
A 		0.7
(-2.3)
A 		1.1
(0.3)
A 		1.5
(3)
A 		1
B 0.9
(-0.3)
A 		1.5
(3)
A 		1.3
(1.9)
A 		0.4
(-3)
A 		1
C 0.8
(-3)
A 		1.6
(3)
A 		1.1
(-0.8)
A 		1
(-1.5)
A 		1
avr 0.8
(-3) 		1.3
(3) 		1.2
(1.8) 		1
(-0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-0.3)
A 		0.6
(-1.7)
A 		0.4
(-3)
A 		1.3
(3)
A 		1.2
(2.3)
A 		0.8
(-0.3)
A 		1
B 1.5
(1.6)
A 		1.8
(3)
A 		1.6
(2.1)
A 		0.9
(-1.2)
A 		1.6
(2.1)
A 		0.5
(-3)
A 		1
C 0.8
(-2.1)
A 		3.8
(3)
A 		1.6
(-0.8)
A 		3.2
(2)
A 		1.9
(-0.3)
A 		0.3
(-3)
A 		4
avr 1
(-1.1) 		2.1
(3) 		1.2
(-0.4) 		1.8
(1.9) 		1.6
(1.1) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12836
Sequence Type Exemplar sequence
Representative Public ID F47H4.11 NCBI
Target Description F47H4.11 /REP_DB=WormBase Gene ID /WP=CE20828 /TR=Q9XU26 /GB=CAB07210.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074994 NCBI Caenorhabditis elegans F47H4.11 (F47H4.11) mRNA, complete cds. 11/11 None
GENEFINDER00000022043 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17352945:17355157:-1 11/11 None
F47H4.11 ENSEMBL cdna:known chromosome:CEL140:V:17352945:17355157:-1 gene:F47H4.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022030 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17352944-17355157(-) 96.22 100.0
Public Domain and Genome References
Gene Title
Ensembl F47H4.11
Entrez Gene 185956 Entrez gene
SwissProt Q9XU26 EMBL-EBI
WormBase CE20828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07210 Hypothetical protein F47H4.11 [Caenorhabditis elegans] ref|NP_507395.1| F47H4.11 [Caenorhabditis elegans] 1.0E-175
blast CAB07210 Hypothetical protein F47H4.11 [Caenorhabditis elegans] ref|NP_507395.1| F47H4.11 [Caenorhabditis elegans] 1.0E-172
blast CAB07212 Hypothetical protein Y20C6A.1 [Caenorhabditis elegans] emb|CAA16306.3| Hypothetical protein Y20C6A.1 [Caenorhabditis elegans] ref|NP_507397.3| Y20C6A.1 [Caenorhabditis elegans] 2.0E-32
blast CAB07204 Hypothetical protein F47H4.2 [Caenorhabditis elegans] ref|NP_507396.2| F47H4.2 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-18
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:180512_AT
tatactcgggccagggcgccgaggaaataaaggagaacattctgagaactcatgagctat
tcctttacaactttggagaaatgctcaaatcacgaaagtttcttctgaaagtagcagctt
ttgatgtaatactatggaaggaaccattgaacaatcacctgtcaactatcatgtcatgcc
ttgacccgagattcctggtaactatagtcctgagctcttcagatgaaggagctagagtcg
attgtgagcaattggtaaacatggagcaatggaaaagtgcaagacgaataaaaatggatg
gcattgaagtgacaatgtcgattcgggattttttgcgctttgatgaagcgataacgacac
tacatacaattactagtgacgacctggttctgttgaaagatcacttcatacacaaccaaa
atccaaagtctctcacattgaattttcaaaactttgtcagttcagaccaaaacaatgaag
atcaggctcatgaggtattgggaacttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACTCGGGCCAGGGCGCCGAGGA 553 647 374 Antisense
CATGAGCTATTCCTTTACAACTTTG 283 211 424 Antisense
CAATCACCTGTCAACTATCATGTCA 680 179 525 Antisense
CTATCATGTCATGCCTTGACCCGAG 230 225 539 Antisense
GCCTTGACCCGAGATTCCTGGTAAC 633 267 551 Antisense
GGTAACTATAGTCCTGAGCTCTTCA 598 501 570 Antisense
GAAGCGATAACGACACTACATACAA 255 343 718 Antisense
ATTACTAGTGACGACCTGGTTCTGT 143 13 742 Antisense
AAAGATCACTTCATACACAACCAAA 131 123 769 Antisense
ACCAAAATCCAAAGTCTCTCACATT 408 85 788 Antisense
GGCTCATGAGGTATTGGGAACTTGC 430 539 858 Antisense
Sequence Source Affymetrix Proprietary Database