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[180511_at]

Description F39B3.2 /REP_DB=WormBase Gene ID /WP=CE10088 /TR=Q94220 /GB=AAB07578.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 28.6
(-2.3)
A 		18.8
(-3)
A 		41.5
(-1.3)
A 		97.3
(3)
P 		79
B 13.7
(-3)
A 		44.7
(3)
A 		28.8
(-0.1)
A 		41.6
(2.4)
A 		31
C 42.5
(-0.5)
A 		24.4
(-3)
A 		28.5
(-2.4)
A 		67.1
(3)
A 		43
avr 28.3
(-3) 		29.3
(-2.9) 		32.9
(-2.3) 		68.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 38.6
(2)
P 		9.4
(-3)
A 		44.1
(3)
A 		27.3
(0.1)
A 		39.4
(2.2)
A 		13.2
(-2.3)
A 		35
B 52.3
(3)
P 		20.8
(-1)
A 		7.3
(-2.8)
A 		5.6
(-3)
A 		16
(-1.7)
A 		26.1
(-0.4)
A 		47
C 32.3
(0.8)
P 		26
(-0)
A 		48.7
(2.9)
A 		49.4
(3)
A 		39.9
(1.8)
P 		3.3
(-3)
A 		46
avr 41.1
(3) 		18.7
(-2) 		33.4
(1.3) 		27.4
(-0.1) 		31.8
(0.9) 		14.2
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.4
(0.7)
A 		4.1
(-3)
A 		10.8
(1)
A 		14.2
(3)
P 		10
B 4.4
(-3)
A 		11
(3)
A 		6.7
(-0.9)
A 		8.9
(1.1)
A 		7
C 14.1
(3)
A 		7
(-3)
A 		9.9
(-0.5)
A 		11.3
(0.6)
A 		7
avr 9.6
(0.2) 		7.4
(-3) 		9.1
(-0.5) 		11.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.1
(-0.3)
P 		3.3
(-2.9)
A 		9.6
(1.4)
A 		6.9
(-0.4)
A 		11.9
(3)
A 		3.2
(-3)
A 		9
B 18.2
(3)
P 		6.9
(-1.1)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		6.5
(-1.2)
A 		9.7
(-0.1)
A 		17
C 12
(2.5)
P 		7.9
(0.5)
A 		12.4
(2.7)
A 		9.9
(1.5)
A 		12.9
(3)
P 		1.1
(-3)
A 		12
avr 12.4
(3) 		6
(-2) 		7.9
(-0.5) 		6.1
(-1.9) 		10.4
(1.4) 		4.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17936
Sequence Type Exemplar sequence
Representative Public ID F39B3.2 NCBI
Target Description F39B3.2 /REP_DB=WormBase Gene ID /WP=CE10088 /TR=Q94220 /GB=AAB07578.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078441
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078441 NCBI Caenorhabditis elegans F39B3.2 (F39B3.2) mRNA, complete cds. A 
F39B3.2 ENSEMBL cdna:known chromosome:CEL140:X:17567569:17571832:-1 gene:F39B3.2 A 
GENEFINDER00000016735 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17567894:17571817:-1 None
SNAP00000016725 ENSEMBL cdna:SNAP chromosome:CEL140:X:17568352:17571817:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17570356-17571816(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39B3.2
Entrez Gene 185489 Entrez gene
SwissProt Q94219 EMBL-EBI
WormBase CE30978 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07577 Hypothetical protein F39B3.2 [Caenorhabditis elegans] ref|NP_510842.2| F39B3.2 [Caenorhabditis elegans] 0.0
blast CAE58696 Hypothetical protein CBG01876 [Caenorhabditis briggsae] 0.0
blast CAE63843 Hypothetical protein CBG08399 [Caenorhabditis briggsae] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-14
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510842.2 8 7-29,34-56,68-90,105-127,157-179,203-225,274-293,313-335
F39B3.2 8 7-29,34-56,68-90,105-127,157-179,203-225,274-293,313-335
GENEFINDER00000016735 8 7-29,34-56,68-90,105-127,157-179,203-225,274-293,313-335
SNAP00000016725 7 10-32,39-61,76-98,127-149,173-195,244-263,283-305
Sequence
Target Sequence 
>C. ELEGANS:180511_AT
ttcacggctttctttgtatttactggtaagatttggacaacttctacgcattttcggaga
gataaaaaacatgtgcatcttctttttaaagattttttaaaaaatctcaaaaatttcaaa
ccatgtttttatcattttttttttgaaattttatttttcaaaacattttgcgggaattat
tctcaatttgctatcggtgtccatatttctgcgaaaagagcgagccggaacacctgcaat
acaatattatttgtctatggaaattgtgcagaaaatgaaaaaaaaacttcttcacaaaaa
ttgaaaaaaaaacttttgcaatcaacaatgttcgcaaatcaaaagttgagacaaagcagt
attctttttgaaaacagaaaattgaaaattcagcaaagtttggaaacaaagttgaaaaaa
attggctatagatttttttgcaatgatttatttgctaccatacagtttttgcttaaaaat
gtatggccaacgacattcaaaatgttttatctccatttccaatctaatttccagaagagt
gcgaaggctgatgatagtcgtgtcagcgatggcagtgatgttctcaattccaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACGGCTTTCTTTGTATTTACTG 485 685 118 Antisense
TTTGGACAACTTCTACGCATTTTCG 132 657 149 Antisense
AAACATGTGCATCTTCTTTTTAAAG 321 125 184 Antisense
ATTCTCAATTTGCTATCGGTGTCCA 471 9 296 Antisense
GCTATCGGTGTCCATATTTCTGCGA 347 303 307 Antisense
GAAAAGAGCGAGCCGGAACACCTGC 284 353 330 Antisense
GAGCCGGAACACCTGCAATACAATA 246 385 339 Antisense
ATTTGCTACCATACAGTTTTTGCTT 515 17 567 Antisense
GTTTTATCTCCATTTCCAATCTAAT 339 449 621 Antisense
GATAGTCGTGTCAGCGATGGCAGTG 605 425 670 Antisense
GGCAGTGATGTTCTCAATTCCAAGG 519 535 688 Antisense
Sequence Source Affymetrix Proprietary Database