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[180510_s_at]

Description ZK1128.4 /REP_DB=WormBase Gene ID /WP=CE01686 /TR=Q09645 /GB=CAA87423.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 469.7
(-3)
P 		529.3
(-1.8)
P 		611.9
(-0.1)
P 		759.6
(3)
P 		290
B 458.9
(-3)
P 		649.7
(2.9)
P 		652.7
(3)
P 		552.5
(-0.1)
P 		194
C 498.1
(-3)
P 		578.2
(3)
P 		570
(2.4)
P 		578.6
(3)
P 		81
avr 475.6
(-3) 		585.7
(1.3) 		611.5
(2.3) 		630.2
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 670
1 2 3 4 5 6 range
A 512
(-2.2)
P 		449.7
(-3)
P 		600.2
(-1.1)
P 		670.8
(-0.2)
P 		916.7
(3)
P 		819.2
(1.7)
P 		467
B 493.5
(-2.7)
P 		464.6
(-3)
P 		567.9
(-2)
P 		725.7
(-0.4)
P 		815.3
(0.5)
P 		1061.7
(3)
P 		597
C 392.1
(-3)
P 		526.2
(-1.7)
P 		575.6
(-1.3)
P 		821.5
(1)
P 		611.4
(-0.9)
P 		1033.5
(3)
P 		641
avr 465.9
(-3) 		480.2
(-2.8) 		581.2
(-1.6) 		739.3
(0.2) 		781.1
(0.7) 		971.5
(3) 		506
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 171
(3)
P 		114.9
(-2.6)
P 		160
(1.9)
P 		111.2
(-3)
P 		60
B 146.3
(1)
P 		160.5
(3)
P 		151.3
(1.7)
P 		117.7
(-3)
P 		43
C 164.9
(1)
P 		166.2
(1.1)
P 		198.7
(3)
P 		97.6
(-3)
P 		101
avr 160.7
(2.1) 		147.2
(0.8) 		170
(3) 		108.8
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 94.4
(-3)
P 		159.9
(-0.8)
P 		130.7
(-1.8)
P 		170.1
(-0.5)
P 		276.6
(3)
P 		199.5
(0.5)
P 		182
B 171.7
(-2.2)
P 		154.6
(-2.6)
P 		137.9
(-3)
P 		192.2
(-1.7)
P 		331.2
(1.5)
P 		395.9
(3)
P 		258
C 145.3
(-3)
P 		160.6
(-2.5)
P 		146.5
(-3)
P 		165.2
(-2.4)
P 		197.8
(-1.4)
P 		346
(3)
P 		201
avr 137.1
(-3) 		158.4
(-2.3) 		138.4
(-3) 		175.8
(-1.7) 		268.5
(1.5) 		313.8
(3) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180510_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6918
Sequence Type Exemplar sequence
Representative Public ID ZK1128.4 NCBI
Target Description ZK1128.4 /REP_DB=WormBase Gene ID /WP=CE01686 /TR=Q09645 /GB=CAA87423.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066848 NCBI Caenorhabditis elegans ZK1128.4 (ZK1128.4) mRNA, complete cds. 11/11 None
SNAP00000023588 ENSEMBL cdna:SNAP chromosome:CEL140:III:10118930:10120036:-1 11/11 None
GENEFINDER00000023601 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10118930:10120036:-1 11/11 None
ZK1128.4 ENSEMBL cdna:known chromosome:CEL140:III:10118919:10120596:-1 gene:ZK1128.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10118925-10120592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1128.4
Entrez Gene 176425 Entrez gene
SwissProt Q09645 EMBL-EBI
WormBase CE01686 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87423 Hypothetical protein ZK1128.4 [Caenorhabditis elegans] ref|NP_499249.1| ZK1128.4 [Caenorhabditis elegans] 0.0
blast CAA87423 Hypothetical protein ZK1128.4 [Caenorhabditis elegans] ref|NP_499249.1| ZK1128.4 [Caenorhabditis elegans] 1.0E-168
blast CAE65032 Hypothetical protein CBG09872 [Caenorhabditis briggsae] 1.0E-133
blast CAE65032 Hypothetical protein CBG09872 [Caenorhabditis briggsae] 1.0E-132
blast AAP41125 ZK1128.4 [Pristionchus pacificus] 8.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR004600 EMBL-EBI Transcription factor Tfb4 1.0E-126
Pfam IPR004600 EMBL-EBI Transcription factor Tfb4 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180510_S_AT
ctattggagcacctctaggacctgccttggctcatgctttttgccatatgaaaaaagaca
gccgagtagtaactgctgatccatgtgatgattctcttggacctcagactacatcagaac
aatcggaaaccgcatctgaaaaggctacgaatagagcagtagtgatatcaattactccta
tcatgggaagcgaacacggatcgttaatgaatttgttcttctctgctgcaaaacagtcaa
tctgcgttgatgttgtatcgatgggagatgattttactggtggaatccttcaacaggcag
cagatattactggcggatcttttctacatgccaaaaaaccacagactttattgaaaattt
taatgactaatatgctaaccgatccaactcaccgtgcagtattctcgaagctttctcata
attcagtcgattatcgagcatcctgtgcgtgtcatcatcagcttgtatcctccggttggg
tgtgctccatctgtctttcagtcctctgccaatatactccaatatgcaaagtttgcaaag
cagcgttcacgattgccaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTGGAGCACCTCTAGGACCTGC 489 223 449 Antisense
GTAGTAACTGCTGATCCATGTGATG 708 451 514 Antisense
GTGATGATTCTCTTGGACCTCAGAC 698 481 533 Antisense
ATTACTGGCGGATCTTTTCTACATG 327 13 754 Antisense
TAATATGCTAACCGATCCAACTCAC 274 635 816 Antisense
GATCCAACTCACCGTGCAGTATTCT 599 415 829 Antisense
GCAGTATTCTCGAAGCTTTCTCATA 674 311 844 Antisense
GATTATCGAGCATCCTGTGCGTGTC 582 429 877 Antisense
TGCGTGTCATCATCAGCTTGTATCC 445 583 894 Antisense
GTCTTTCAGTCCTCTGCCAATATAC 182 469 941 Antisense
AAGCAGCGTTCACGATTGCCAATCT 607 151 986 Antisense
Sequence Source Affymetrix Proprietary Database