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[180509_at]

Description ZK1086.2 /REP_DB=WormBase Gene ID /WP=CE06681 /TR=Q23396 /GB=CAA94224.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 31.3
(-1.1)
A 		15.4
(-3)
A 		65
(3)
A 		42.2
(0.2)
A 		50
B 5.9
(-3)
A 		12.3
(-1.8)
A 		38.9
(3)
A 		35.1
(2.3)
A 		33
C 18.8
(-2.9)
A 		17.6
(-3)
A 		70.6
(3)
A 		36.5
(-0.9)
A 		53
avr 18.7
(-2.5) 		15.1
(-3) 		58.2
(3) 		37.9
(0.2) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 15.2
(-2.3)
A 		8.8
(-3)
A 		23
(-1.5)
A 		62.3
(2.6)
A 		42.3
(0.5)
A 		66.5
(3)
A 		58
B 2.8
(-3)
A 		36
(0.9)
A 		53.9
(3)
A 		52.1
(2.8)
A 		32.7
(0.5)
A 		41.7
(1.6)
A 		51
C 14.2
(-0.8)
A 		12
(-1.4)
A 		6.3
(-3)
A 		16.6
(-0.1)
A 		12
(-1.4)
A 		27.5
(3)
A 		21
avr 10.7
(-3) 		18.9
(-1.6) 		27.7
(-0) 		43.7
(2.7) 		29
(0.2) 		45.2
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11.4
(0.5)
A 		3.3
(-3)
A 		17
(3)
A 		6.2
(-1.7)
A 		14
B 1.9
(-3)
A 		3
(-2.1)
A 		9
(3)
A 		7.5
(1.7)
A 		7
C 6.2
(-2.7)
A 		5.1
(-3)
A 		24.6
(3)
A 		6.2
(-2.7)
A 		20
avr 6.5
(-1.8) 		3.8
(-3) 		16.9
(3) 		6.6
(-1.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.8
(-3)
A 		3.1
(-2.9)
A 		5
(-2)
A 		15.8
(2.8)
A 		12.8
(1.5)
A 		16.2
(3)
A 		13
B 1
(-3)
A 		12
(1.6)
A 		13.1
(2)
A 		13.8
(2.3)
A 		13.3
(2.1)
A 		15.5
(3)
A 		15
C 5.3
(-0.1)
A 		3.7
(-1.3)
A 		1.6
(-3)
A 		3.3
(-1.7)
A 		3.9
(-1.2)
A 		9.2
(3)
A 		8
avr 3
(-3) 		6.3
(-1.1) 		6.6
(-1) 		11
(1.5) 		10
(1) 		13.6
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17930
Sequence Type Exemplar sequence
Representative Public ID ZK1086.2 NCBI
Target Description ZK1086.2 /REP_DB=WormBase Gene ID /WP=CE06681 /TR=Q23396 /GB=CAA94224.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077902 NCBI Caenorhabditis elegans ZK1086.2 (ZK1086.2) mRNA, complete cds. 11/11 None
GENEFINDER00000043457 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13792226:13796764:-1 11/11 None
ZK1086.2 ENSEMBL cdna:known chromosome:CEL140:X:13792437:13793518:-1 gene:ZK1086.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043453 6/11 Cross Hyb Matching Probes None
SNAP00000043454 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13792436-13793518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1086.2
Entrez Gene 191519 Entrez gene
SwissProt Q23396 EMBL-EBI
WormBase CE06681 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94224 Hypothetical protein ZK1086.2 [Caenorhabditis elegans] ref|NP_510303.1| ZK1086.2 [Caenorhabditis elegans] 4.0E-70
blast CAA94224 Hypothetical protein ZK1086.2 [Caenorhabditis elegans] ref|NP_510303.1| ZK1086.2 [Caenorhabditis elegans] 4.0E-66
blast AAA81768 Hypothetical protein B0310.4 [Caenorhabditis elegans] ref|NP_508111.1| B0310.4 [Caenorhabditis elegans] sp|Q10940|YWS4_CAEEL Hypothetical protein B0310.4 in chromosome X 5.0E-27
blast T31576 hypothetical protein Y105C5A.s - Caenorhabditis elegans 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.8E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.2E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.8E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510303.1 3 44-63,73-95,102-124
ZK1086.2 3 44-63,73-95,102-124
GENEFINDER00000043457 4 209-226,239-261,271-293,329-351
Sequence
Target Sequence 
>C. ELEGANS:180509_AT
tccatgtcagattccgccgatttgggagcgtaatgcagaaatgttcgaagatgcgagaaa
tttcattgaatacgtgtcgacttacttggcaaaggatttttataagcttaccctctacgc
ctacactgttctcttggcttttttcattgctataattgaagcacggcactatgatttcaa
gcagatgggcgacacaattttcattctggccatctttgtgttattctgtatgggagccac
ttgcagtttcacatttttcgccatgacttgtcgtcatgctctttttctggtcccactcct
ctttcttcaagtctttgtgctgctctacggaatcaccaattacttctgtccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATGTCAGATTCCGCCGATTTGG 60 591 36 Antisense
GAATACGTGTCGACTTACTTGGCAA 88 327 103 Antisense
GATTTTTATAAGCTTACCCTCTACG 15 335 130 Antisense
GTTCTCTTGGCTTTTTTCATTGCTA 633 443 163 Antisense
GAAGCACGGCACTATGATTTCAAGC 433 341 193 Antisense
TTTCATTCTGGCCATCTTTGTGTTA 178 673 234 Antisense
GCCACTTGCAGTTTCACATTTTTCG 456 279 271 Antisense
CACATTTTTCGCCATGACTTGTCGT 121 197 285 Antisense
TCCTCTTTCTTCAAGTCTTTGTGCT 181 593 332 Antisense
TTGTGCTGCTCTACGGAATCACCAA 529 707 350 Antisense
GAATCACCAATTACTTCTGTCCATT 696 327 365 Antisense
Sequence Source Affymetrix Proprietary Database