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[180508_s_at]

Description C14C10.4 /REP_DB=WormBase Gene ID /WP=CE05283 /TR=Q17974 /GB=CAA98428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 35      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 75      6grp_total > 36      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 841
1 2 3 4 range
A 1387.9
(3)
P 		865
(-0.9)
P 		769.8
(-1.6)
P 		588.4
(-3)
P 		800
B 1145.6
(3)
P 		772.9
(-2.2)
P 		822.3
(-1.6)
P 		719.4
(-3)
P 		426
C 1295.8
(3)
P 		778.4
(-1.1)
P 		937.8
(0.1)
P 		546.7
(-3)
P 		749
avr 1276.4
(3) 		805.4
(-1.3) 		843.3
(-0.9) 		618.2
(-3) 		658

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 952.8
(1.3)
P 		1022.5
(3)
P 		811.6
(-2)
P 		777.7
(-2.9)
P 		771.9
(-3)
P 		841.8
(-1.3)
P 		251
B 1168.3
(3)
P 		982.4
(0.9)
P 		818
(-0.9)
P 		892.2
(-0.1)
P 		633.5
(-3)
P 		882.1
(-0.2)
P 		535
C 990.1
(2.7)
P 		1010.7
(3)
P 		933.5
(1.7)
P 		914.1
(1.4)
P 		648.2
(-3)
P 		849.6
(0.3)
P 		363
avr 1037.1
(3) 		1005.2
(2.5) 		854.4
(-0.1) 		861.3
(0) 		684.5
(-3) 		857.8
(-0.1) 		353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 505.3
(3)
P 		187.8
(-1.5)
P 		201.2
(-1.4)
P 		86.1
(-3)
P 		419
B 365.3
(3)
P 		190.9
(-1.9)
P 		190.5
(-1.9)
P 		153.3
(-3)
P 		212
C 428.9
(3)
P 		223.8
(-0.7)
P 		326.9
(1.2)
P 		92.2
(-3)
P 		337
avr 433.2
(3) 		200.8
(-1.3) 		239.5
(-0.6) 		110.5
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 175.6
(-3)
P 		363.7
(3)
P 		176.8
(-3)
P 		197.2
(-2.3)
P 		232.9
(-1.2)
P 		205
(-2.1)
P 		188
B 406.5
(3)
P 		327
(0.7)
P 		198.6
(-3)
P 		236.3
(-1.9)
P 		257.4
(-1.3)
P 		328.9
(0.8)
P 		208
C 367
(3)
P 		308.4
(1.1)
P 		237.6
(-1.2)
P 		183.8
(-3)
P 		209.7
(-2.2)
P 		284.4
(0.3)
P 		183
avr 316.4
(2.2) 		333
(3) 		204.3
(-3) 		205.8
(-2.9) 		233.3
(-1.6) 		272.8
(0.2) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12529
Sequence Type Exemplar sequence
Representative Public ID C14C10.4 NCBI
Target Description C14C10.4 /REP_DB=WormBase Gene ID /WP=CE05283 /TR=Q17974 /GB=CAA98428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073750 NCBI Caenorhabditis elegans C14C10.4 (C14C10.4) mRNA, complete cds. 11/11 None
SNAP00000017651 ENSEMBL cdna:SNAP chromosome:CEL140:V:12595350:12598885:-1 11/11 None
GENEFINDER00000017655 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12595350:12598885:-1 11/11 None
C14C10.4.1 ENSEMBL cdna:known chromosome:CEL140:V:12595159:12598885:-1 gene:C14C10.4 11/11 None
C14C10.4.2 ENSEMBL cdna:known chromosome:CEL140:V:12595159:12598887:-1 gene:C14C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12595349-12598885(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C10.4
Entrez Gene 179724 Entrez gene
SwissProt Q17974 EMBL-EBI
WormBase CE05283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98428 Hypothetical protein C14C10.4 [Caenorhabditis elegans] ref|NP_506151.1| C14C10.4 [Caenorhabditis elegans] 0.0
blast CAE75520 Hypothetical protein CBG23538 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180508_S_AT
gaaacgacttgccaggagctcttcgtatggctgtcgaagaaacaaatgctagtaatcgtg
cttttgggcaagttcctattatgattgaagcaatcaaacgaaacgaccgtcaaacattgg
aaagtgtgcacacaatggttagatctgctcacagttctgatatggccaatgtgaatcttg
cttacgcacttattcattccaacaacatgcaacgcgcccggagtcttattgaacgtcaga
atttaaacatcgaaagccgtgttcttcaatactttaccacattggcgtctgcttcggaga
atccaagattattgaaagatatgttcattgttttcaacggacgtgcatctacattggatc
tcaataacttattagaactggcaacaagaaaattatggaacatcaacgatattgaatcac
tgcaagagctctcgaatgaaatcgagacaacatcattccctcttcagaacaaacttcgca
cattctttgacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGACTTGCCAGGAGCTCTTCG 66 359 2651 Antisense
ATCGTGCTTTTGGGCAAGTTCCTAT 295 35 2705 Antisense
GGTTAGATCTGCTCACAGTTCTGAT 665 505 2787 Antisense
GGCCAATGTGAATCTTGCTTACGCA 257 545 2814 Antisense
CTTACGCACTTATTCATTCCAACAA 161 221 2831 Antisense
CGCCCGGAGTCTTATTGAACGTCAG 227 255 2865 Antisense
TACTTTACCACATTGGCGTCTGCTT 523 645 2920 Antisense
GGCGTCTGCTTCGGAGAATCCAAGA 564 541 2934 Antisense
GGACGTGCATCTACATTGGATCTCA 238 525 2989 Antisense
AATCGAGACAACATCATTCCCTCTT 364 169 3090 Antisense
CAAACTTCGCACATTCTTTGACGAT 630 191 3120 Antisense
Sequence Source Affymetrix Proprietary Database