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[180507_at]

Description C47A10.6 /REP_DB=WormBase Gene ID /WP=CE15719 /TR=O45308 /GB=CAB03971.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 37      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 195.9
(0.7)
P 		120.8
(-1.9)
P 		87.5
(-3)
P 		261.3
(3)
P 		174
B 226.5
(3)
P 		128.5
(-2.3)
P 		115
(-3)
P 		223.1
(2.8)
P 		112
C 268.2
(2.6)
P 		104.6
(-2.7)
P 		94.8
(-3)
P 		280.3
(3)
P 		186
avr 230.2
(2) 		118
(-2.3) 		99.1
(-3) 		254.9
(3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 128.5
(-0.2)
P 		133.2
(0.3)
P 		101
(-2.9)
P 		108.2
(-2.2)
P 		100
(-3)
P 		160
(3)
P 		60
B 149.8
(2.1)
P 		159.1
(3)
P 		95.6
(-3)
P 		109.4
(-1.7)
P 		102.6
(-2.3)
P 		157.6
(2.9)
P 		64
C 146.7
(2.5)
P 		153.4
(3)
P 		103.1
(-1.1)
P 		78.9
(-3)
P 		84.1
(-2.6)
P 		125.4
(0.7)
P 		75
avr 141.7
(2.2) 		148.6
(3) 		99.9
(-2.5) 		98.8
(-2.6) 		95.6
(-3) 		147.7
(2.9) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 71.3
(3)
P 		26.2
(-2.6)
P 		22.9
(-3)
P 		38.2
(-1.1)
P 		48
B 72.2
(3)
P 		31.7
(-2.3)
P 		26.7
(-3)
P 		47.6
(-0.2)
P 		46
C 88.8
(3)
P 		30.1
(-3)
P 		33
(-2.7)
P 		47.3
(-1.2)
P 		59
avr 77.4
(3) 		29.3
(-2.8) 		27.5
(-3) 		44.4
(-1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 23.7
(-2.6)
P 		47.4
(3)
P 		22
(-3)
P 		27.4
(-1.7)
P 		30.2
(-1.1)
P 		39
(1)
P 		25
B 52.1
(1.9)
P 		53
(2)
P 		23.2
(-3)
P 		29
(-2)
P 		41.7
(0.1)
P 		58.8
(3)
P 		36
C 54.4
(3)
P 		46.8
(1.8)
P 		26.2
(-1.4)
P 		15.9
(-3)
P 		27.2
(-1.2)
P 		42
(1.1)
P 		39
avr 43.4
(1.6) 		49.1
(3) 		23.8
(-3) 		24.1
(-2.9) 		33
(-0.8) 		46.6
(2.4) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12780
Sequence Type Exemplar sequence
Representative Public ID C47A10.6 NCBI
Target Description C47A10.6 /REP_DB=WormBase Gene ID /WP=CE15719 /TR=O45308 /GB=CAB03971.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075091 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-12) (srab-12) mRNA, complete cds. 11/11 None
SNAP00000022113 ENSEMBL cdna:SNAP chromosome:CEL140:V:17783024:17786215:-1 10/11 None
GENEFINDER00000022124 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17782711:17786215:-1 10/11 None
C47A10.6 ENSEMBL cdna:known chromosome:CEL140:V:17783024:17786215:-1 gene:C47A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17783023-17786215(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srab-12
Ensembl C47A10.6
Entrez Gene 183531 Entrez gene
SwissProt O45308 EMBL-EBI
WormBase CE15719 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03971 Hypothetical protein C47A10.6 [Caenorhabditis elegans] ref|NP_507492.1| Serpentine Receptor, class AB (class A-like) family member (srab-12) [Caenorhabditis elegans] 0.0
blast CAE61726 Hypothetical protein CBG05677 [Caenorhabditis briggsae] 1.0E-165
blast CAB03971 Hypothetical protein C47A10.6 [Caenorhabditis elegans] ref|NP_507492.1| Serpentine Receptor, class AB (class A-like) family member (srab-12) [Caenorhabditis elegans] 1.0E-165
blast CAB03971 Hypothetical protein C47A10.6 [Caenorhabditis elegans] ref|NP_507492.1| Serpentine Receptor, class AB (class A-like) family member (srab-12) [Caenorhabditis elegans] 1.0E-158
blast CAE61726 Hypothetical protein CBG05677 [Caenorhabditis briggsae] 1.0E-141
blast CAE61726 Hypothetical protein CBG05677 [Caenorhabditis briggsae] 1.0E-140
blast CAE74134 Hypothetical protein CBG21805 [Caenorhabditis briggsae] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 3.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507492.1 7 26-48,68-90,105-127,146-165,185-207,245-267,277-299
C47A10.6 7 26-48,68-90,105-127,146-165,185-207,245-267,277-299
SNAP00000022113 6 27-49,69-91,104-126,146-168,209-231,241-263
GENEFINDER00000022124 7 26-48,68-90,105-127,162-184,207-229,267-289,299-321
Sequence
Target Sequence 
>C. ELEGANS:180507_AT
atagctatatttcagctcctctgctctcttattctaatggcttctgtattccacgagtac
gattttgatgctccacactactattgctccagcatctctgtaaagtttccgctttgggtg
ataattccagaagtcttgattattgtttttcaaattgccgccagaattgttaatcggtgt
ttgttggcgttgaataagagaatccgtgcccgatccgtcaccgccactctaagtaatcgg
taccagctggaggccaatatgcggaatattcgacttcttcaatctttcaccttgtgtgat
ctgatttttgtgttcacctgcttcacactgtccgcgcccgtacattattacagtagtgaa
atggaacgacccacgtatcatgctttagtcgaagttgtgaactttgtacccctctactca
gttgtcatgccactctacctatgggtattccagaaaaaacatcgtgacaccgtatcaaat
acactgcaagcgtcacttacaacatcatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCTATATTTCAGCTCCTCTGCT 256 23 460 Antisense
TCTGCTCTCTTATTCTAATGGCTTC 352 609 479 Antisense
ATGGCTTCTGTATTCCACGAGTACG 137 53 496 Antisense
GATTTTGATGCTCCACACTACTATT 485 429 520 Antisense
CACTACTATTGCTCCAGCATCTCTG 495 197 535 Antisense
CGTCACCGCCACTCTAAGTAATCGG 514 245 675 Antisense
TGATTTTTGTGTTCACCTGCTTCAC 262 565 761 Antisense
TCCGCGCCCGTACATTATTACAGTA 654 595 790 Antisense
ACGACCCACGTATCATGCTTTAGTC 317 91 825 Antisense
GAAGTTGTGAACTTTGTACCCCTCT 467 323 850 Antisense
CAAGCGTCACTTACAACATCATCTG 126 187 946 Antisense
Sequence Source Affymetrix Proprietary Database