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[180506_at] 7TM chemoreceptor, str family

Description Y9C9A.9 /REP_DB=WormBase Gene ID /WP=CE25658 /TR=Q9N2T4 /GB=AAF60933.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 04      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 27.5
(0)
P 		13.9
(-2.2)
A 		8.9
(-3)
A 		46.1
(3)
P 		37
B 16.4
(-2.4)
A 		33.9
(1.5)
A 		13.9
(-3)
A 		40.4
(3)
P 		27
C 32
(0.1)
P 		5.4
(-3)
A 		18.4
(-1.5)
P 		56.4
(3)
P 		51
avr 25.3
(-0.9) 		17.7
(-2.3) 		13.7
(-3) 		47.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 43.8
(2.3)
P 		20.8
(-2.5)
A 		24.6
(-1.7)
A 		21.5
(-2.4)
A 		47.4
(3)
A 		18.5
(-3)
A 		29
B 22.7
(-0.7)
A 		12.2
(-3)
A 		25.2
(-0.1)
A 		39.2
(3)
A 		25
(-0.2)
A 		12.5
(-2.9)
A 		27
C 25.3
(3)
M 		25
(2.9)
A 		20.2
(1)
A 		25.2
(3)
A 		10.7
(-2.8)
A 		10.2
(-3)
A 		15
avr 30.6
(3) 		19.3
(-1) 		23.3
(0.4) 		28.6
(2.3) 		27.7
(2) 		13.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10
(3)
P 		3
(-2.5)
A 		2.3
(-3)
A 		6.8
(0.5)
P 		8
B 5.2
(-0.8)
A 		8.4
(2.8)
A 		3.2
(-3)
A 		8.6
(3)
P 		5
C 10.6
(3)
P 		1.6
(-3)
A 		6.4
(0.2)
P 		9.5
(2.3)
P 		9
avr 8.6
(3) 		4.3
(-2.6) 		4
(-3) 		8.3
(2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8.1
(-0.8)
P 		7.4
(-1.2)
A 		5.4
(-2.4)
A 		5.4
(-2.4)
A 		14.3
(3)
A 		4.5
(-3)
A 		10
B 7.9
(0.6)
A 		4.1
(-3)
A 		6.1
(-1.1)
A 		10.4
(3)
A 		10.1
(2.7)
A 		4.7
(-2.4)
A 		6
C 9.4
(3)
M 		7.6
(1.2)
A 		5.1
(-1.3)
A 		5.1
(-1.3)
A 		3.4
(-3)
A 		3.4
(-3)
A 		6
avr 8.5
(2.1) 		6.4
(-0.4) 		5.5
(-1.5) 		7
(0.3) 		9.3
(3) 		4.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10403
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.9 NCBI
Target Description Y9C9A.9 /REP_DB=WormBase Gene ID /WP=CE25658 /TR=Q9N2T4 /GB=AAF60933.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068274 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-158) (str-158) mRNA, complete cds. 11/11 None
Y9C9A.9 ENSEMBL cdna:known chromosome:CEL140:IV:4918064:4919599:1 gene:Y9C9A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021406 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4918069-4919605(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-158
Ensembl Y9C9A.9
Entrez Gene 189414 Entrez gene
SwissProt Q9N2T4 EMBL-EBI
WormBase CE38257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500675 Seven TM Receptor family member (str-158) [Caenorhabditis elegans] gb|AAF60933.2| Seven tm receptor protein 158 [Caenorhabditis elegans] 1.0E-176
blast NP_500675 Seven TM Receptor family member (str-158) [Caenorhabditis elegans] gb|AAF60933.2| Seven tm receptor protein 158 [Caenorhabditis elegans] 1.0E-162
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 5.0E-85
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 3.0E-81
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 4.0E-81
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 4.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500675.2 7 10-32,45-67,92-114,134-156,206-228,249-271,286-307
Y9C9A.9 7 10-32,45-67,92-114,134-156,206-228,249-271,286-307
Sequence
Target Sequence 
>C. ELEGANS:180506_AT
gatttttatatctcttctcggtggtatcatatcgagtagtctattcttgacacttggtcc
caacgatgaaatgaccgaacacttaagaataaacttgtcaaaactatacaacttagatgt
cgatagaatatcgtacattggacttttgttttggacaactagaagtggaaatttgcacct
gcgactggaagatttattgaaatattttgctttaaaaggtttcatgatgattccattttg
tattatcatttattgtggtgtgatgagttatttaaaaatcaaaaacttgaattctcaagg
tgaaagtgaattttcgaaacgacttcaagtgcaattgtataaagcattgattgctcagtt
tctaattccaatgcttttcctctttttaccaacttcaacttttatatcttgcccattatt
taaattagatatttcttggatgaaccgtataattacaattttatattcattttatttcgc
gttggatccgtttcccataatttacttagtggatgaatatcgaaaagcagtttcttccgc
tatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTTATATCTCTTCTCGGTGGT 134 429 423 Antisense
GGTGGTATCATATCGAGTAGTCTAT 122 499 442 Antisense
TATTCTTGACACTTGGTCCCAACGA 437 663 464 Antisense
GTACATTGGACTTTTGTTTTGGACA 170 461 555 Antisense
GTGGAAATTTGCACCTGCGACTGGA 377 491 587 Antisense
GCATTGATTGCTCAGTTTCTAATTC 595 307 766 Antisense
CAGTTTCTAATTCCAATGCTTTTCC 43 207 778 Antisense
ACTTTTATATCTTGCCCATTATTTA 664 101 820 Antisense
CATTTTATTTCGCGTTGGATCCGTT 584 213 890 Antisense
TGGATCCGTTTCCCATAATTTACTT 99 543 905 Antisense
GAAAAGCAGTTTCTTCCGCTATATC 248 355 944 Antisense
Sequence Source Affymetrix Proprietary Database