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[180505_at]

Description F29C12.1 /REP_DB=WormBase Gene ID /WP=CE19820 /TR=Q9XV50 /GB=CAB04218.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 90      4grp_high_8_8 > 46      6grp_highest_nonorm > 44      6grp_total > 92      4grp_total > 49      6grp_highest_sub > 05      6grp_cgc > 97      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3968
1 2 3 4 range
A 8.2
(-3)
A 		3976
(3)
P 		3538.5
(2.3)
P 		124
(-2.8)
P 		3968
B 80.3
(-3)
P 		3343.5
(2.5)
P 		3638.5
(3)
P 		75.8
(-3)
A 		3563
C 37.7
(-3)
M 		3161.9
(2.9)
P 		3214.1
(3)
P 		107.6
(-2.9)
A 		3176
avr 42.1
(-3) 		3493.8
(3) 		3463.7
(2.9) 		102.5
(-2.9) 		3452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3142
1 2 3 4 5 6 range
A 268.9
(-3)
P 		2002.2
(0.7)
P 		999.6
(-1.5)
P 		2845.9
(2.4)
P 		3112.4
(3)
P 		654
(-2.2)
P 		2844
B 206.2
(-3)
P 		1904.1
(0.8)
P 		1289
(-0.6)
P 		2895.5
(3)
P 		2520
(2.2)
P 		587
(-2.2)
P 		2689
C 240.9
(-3)
P 		1991.5
(0.4)
P 		1220.4
(-1.1)
P 		2610.8
(1.6)
P 		3347.9
(3)
P 		506.1
(-2.5)
P 		3107
avr 238.7
(-3) 		1965.9
(0.8) 		1169.7
(-1) 		2784.1
(2.5) 		2993.4
(3) 		582.4
(-2.3) 		2755
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1117
1 2 3 4 range
A 3
(-3)
A 		863.1
(2.6)
P 		925
(3)
P 		18.2
(-2.9)
P 		922
B 25.6
(-2.9)
P 		825.8
(2.9)
P 		843.1
(3)
P 		16.2
(-3)
A 		827
C 12.5
(-3)
M 		909.1
(1.9)
P 		1120.2
(3)
P 		18.1
(-3)
A 		1108
avr 13.7
(-3) 		866
(2.4) 		962.8
(3) 		17.5
(-3) 		949

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1034
1 2 3 4 5 6 range
A 49.6
(-3)
P 		712.1
(1.5)
P 		217.7
(-1.9)
P 		721.8
(1.5)
P 		939.2
(3)
P 		159.2
(-2.3)
P 		890
B 71.7
(-3)
P 		633.8
(0.5)
P 		313
(-1.5)
P 		766.9
(1.4)
P 		1023.9
(3)
P 		218.9
(-2.1)
P 		952
C 89.3
(-3)
P 		607.7
(0.1)
P 		310.6
(-1.7)
P 		525
(-0.4)
P 		1083.3
(3)
P 		169.4
(-2.5)
P 		994
avr 70.2
(-3) 		651.2
(0.7) 		280.4
(-1.7) 		671.2
(0.8) 		1015.5
(3) 		182.5
(-2.3) 		945
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2713
Sequence Type Exemplar sequence
Representative Public ID F29C12.1 NCBI
Target Description F29C12.1 /REP_DB=WormBase Gene ID /WP=CE19820 /TR=Q9XV50 /GB=CAB04218.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026956(11), NM_001026957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026956 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-32) (pqn-32) mRNA, complete cds. 11/11 None
NM_001026957 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-32) (pqn-32) mRNA, complete cds. 11/11 None
SNAP00000014923 ENSEMBL cdna:SNAP chromosome:CEL140:II:13107919:13109889:1 11/11 None
GENEFINDER00000014928 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13107919:13109889:1 11/11 None
F29C12.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:13107913:13109889:1 gene:F29C12.1 11/11 None
F29C12.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:13107915:13109889:1 gene:F29C12.1 11/11 None
F29C12.1b ENSEMBL cdna:known chromosome:CEL140:II:13107915:13110061:1 gene:F29C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13107915-13109886(+) 88.42 100.0
Public Domain and Genome References
Ensembl F29C12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46603 Hypothetical protein F29C12.1b [Caenorhabditis elegans] ref|NP_001022128.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-32) [Caenorhabditis elegans] 8.0E-82
blast CAB04218 Hypothetical protein F29C12.1a [Caenorhabditis elegans] ref|NP_001022127.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-32) [Caenorhabditis elegans] 8.0E-82
Sequence
Target Sequence 
>C. ELEGANS:180505_AT
gctgcagcttcagttgactctagaccagtcaactttgagaagtatatcgatgcaggaaag
ggaactccacttgctccaccaccacaggcccaatgtccacgccaaccaggatggcagcca
tgcatcactaaggacaccgccaatgatcgattccgcaactgctgttctcgtctcggagag
ggatgtgctccactttgtaactacgatgctacccttgctactatgcaactcgctgttctc
actggacgctgtccattggctaaggtcggagacgtgatgatctgcgcttcgggctaccaa
gacgcatcccagtgttgcgaggcttacggagtcttcgagccaggatacgagcactgccgt
ccatactgtaacccatcggccggtcttccagaaggcggacttcttaccgagaagtacaag
tgtctcgtcaaactgtcacacattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCAGCTTCAGTTGACTCTAGAC 279 297 1315 Antisense
GCCATGCATCACTAAGGACACCGCC 476 281 1431 Antisense
AATGATCGATTCCGCAACTGCTGTT 267 165 1456 Antisense
ATGTGCTCCACTTTGTAACTACGAT 549 49 1497 Antisense
TGCTACCCTTGCTACTATGCAACTC 682 579 1521 Antisense
GGACGCTGTCCATTGGCTAAGGTCG 654 521 1558 Antisense
CGGAGACGTGATGATCTGCGCTTCG 551 243 1581 Antisense
TGCGCTTCGGGCTACCAAGACGCAT 160 583 1597 Antisense
AGACGCATCCCAGTGTTGCGAGGCT 275 71 1614 Antisense
TTACGGAGTCTTCGAGCCAGGATAC 666 681 1638 Antisense
GTCTCGTCAAACTGTCACACATTCA 187 471 1736 Antisense
Sequence Source Affymetrix Proprietary Database